View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5477_low_17 (Length: 217)
Name: NF5477_low_17
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5477_low_17 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 26835244 - 26835435
Alignment:
| Q |
11 |
acatcatccatgaacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattcctactacatcaatccacatgttggttc |
110 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26835244 |
acatcatcgacgaacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattgctactacatcaatccacatgttggttc |
26835343 |
T |
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| Q |
111 |
cattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttagaacttcattc |
202 |
Q |
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| T |
26835344 |
cattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttaaaacttcattc |
26835435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 45420053 - 45420244
Alignment:
| Q |
11 |
acatcatccatgaacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattcctactacatcaatccacatgttggttc |
110 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45420053 |
acatcatccatgaacctctctggtttgaaatcattcacatcatctccccataattctgggtcatggtgcatcgctactacatcaatccacatgttggttc |
45420152 |
T |
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| Q |
111 |
cattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttagaacttcattc |
202 |
Q |
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| T |
45420153 |
cattaggcactgttacatcatcaacttgaatgtcttctcttgcttgtctttgcacatttggtgctggtgggtatagtcttagaacttcattc |
45420244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 45410744 - 45410935
Alignment:
| Q |
11 |
acatcatccatgaacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattcctactacatcaatccacatgttggttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
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| T |
45410744 |
acatcatccatgaacctctctggtttgaactcattcacatcatctccccataattctgggtcatggtgcatcgctactacatcaatccacatgtttgttc |
45410843 |
T |
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| Q |
111 |
cattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttagaacttcattc |
202 |
Q |
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| T |
45410844 |
cattaggcactgttacatcatcaacttgaatatcttctcttgcttgtctttgcacatttggtgctggtgggtatagtcttagaacttcattc |
45410935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 29799808 - 29799980
Alignment:
| Q |
11 |
acatcatccatgaacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattcctactacatcaatccacatgttggttc |
110 |
Q |
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|||||||||||||| || |||||| |||||||| |||| |||||||| ||| | ||||||||||||| | || || || |||||||| ||||| | |
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| T |
29799808 |
acatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgatccacatattggtcc |
29799907 |
T |
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| Q |
111 |
cattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggta |
183 |
Q |
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| T |
29799908 |
cattaggaattgttagattatcaagtttaatgtcttctctagattgcctttgaacatttggtgctgttgggta |
29799980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 63572 - 63749
Alignment:
| Q |
12 |
catcatccatgaacctctctggtttgaactcattcacatcatctccccataat-tcagggtcatggtgcattcctactacatcaatccacatgttggttc |
110 |
Q |
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|||||| |||||||||||||||||| |||| || |||||| ||||||||| ||| | |||||||||||| |||| || |||||||| |||||||| | |
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| T |
63572 |
catcattcatgaacctctctggtttaaacttgtttgcatcattcccccataatgtcatg-tcatggtgcattgctacaacgtcaatccaaatgttggtcc |
63670 |
T |
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| Q |
111 |
cattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtct |
189 |
Q |
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| T |
63671 |
ctttaggcacctttatattatctactcgaatatcctccttagcttgcctttgcacatttggagatggtgggtagagtct |
63749 |
T |
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