View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5477_low_2 (Length: 443)
Name: NF5477_low_2
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5477_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 4 - 428
Target Start/End: Original strand, 45130609 - 45131032
Alignment:
| Q |
4 |
tctactatgtgcgtgtgtatgtatatgttctagtgttgtatttctttggtgtaagagacagaacactatagaaaataagcaaataatgaatgtagaagtt |
103 |
Q |
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| T |
45130609 |
tctactatgtgcgtgtgtatgtatatgttctagtgttgtatttctttggtgtaagagacagaacactatagaaaataagcaaataatgaatgtagaagtt |
45130708 |
T |
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| Q |
104 |
ccaacaccaacaagatcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctaccaatgtacatt |
203 |
Q |
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| T |
45130709 |
ccaacaccaacaagatcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttgctgcaagctaccaatgtacatt |
45130808 |
T |
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| Q |
204 |
ttggtgcaagacctgatctcaaaagtaagtgaggcggggtaattttatatatattattgagnnnnnnnnnattgttgtgtgtaaattgggtatcctccat |
303 |
Q |
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| T |
45130809 |
ttggtgcaagacctgatctcaagagtaagtgaggcggggtaattttatatatattattgag-ttttttttattgttgtgtgtaaattgggtatcctccat |
45130907 |
T |
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| Q |
304 |
acgcagctgcagagactaatatcttttaccatgttgattgtatgaacaggacagtgatatataaaatttgttaattttgcagaaattctgtttgagtgta |
403 |
Q |
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| T |
45130908 |
acgcagctgcagagactaatatcttttaccatgtcgattgtatcaacgggacaatgatatataaaatttgttaattttgcagaaattctgtttgagtgta |
45131007 |
T |
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| Q |
404 |
aagacaaagatgttggagttatggt |
428 |
Q |
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| T |
45131008 |
aagacaaagatgttggagttatggt |
45131032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 45113722 - 45113950
Alignment:
| Q |
21 |
tatgtatatgttctagtgttgtatttctttggtgtaagagacagaacactatagaaaataagcaaataatgaatgtagaagttccaacaccaacaagatc |
120 |
Q |
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| T |
45113722 |
tatgtatatgttctagtgttgtttttctttggttgaagagattaaacaaattagaaaataagcatataatgaatgtagaagtttcaacaccagcaagatc |
45113821 |
T |
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| Q |
121 |
accagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctaccaatgtacattttggtgcaagacctgat |
220 |
Q |
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| T |
45113822 |
accagggtcatggatttatggttcagaaagagagcttgagagccttcctcatcaatctttagtgcaagctaccaatgtacattttggctcaagacctgat |
45113921 |
T |
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| Q |
221 |
ctcaaaagtaagtgaggcggggtaatttt |
249 |
Q |
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| T |
45113922 |
ctcaagagtaagtgaggcagggtaatttt |
45113950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 45114071 - 45114129
Alignment:
| Q |
368 |
aatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgttggagttatg |
426 |
Q |
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| T |
45114071 |
aatttgttaattttgcagaaattctgtttgagtgtgaaggcaaagatgttggagttatg |
45114129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 11593380 - 11593427
Alignment:
| Q |
186 |
aagctaccaatgtacattttggtgcaagacctgatctcaaaagtaagt |
233 |
Q |
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| T |
11593380 |
aagctaccaatgtgcattatggtgaaagacctgatcttaaaagtaagt |
11593427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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