View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5477_low_7 (Length: 352)
Name: NF5477_low_7
Description: NF5477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5477_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 39254137 - 39254452
Alignment:
| Q |
18 |
gaacattcgtgctttgttgtcttcacgtcataaaaccaaaataacaaatcatggttcctaaattttcttattatataaacttgtttttgtttcctaaatt |
117 |
Q |
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| T |
39254137 |
gaacattcgtgctttgttgtcttcacgtcataaaaccaaaataacaaatcatggttcctaaattttcttattatataaacttgtttttgtttcctaaatt |
39254236 |
T |
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| Q |
118 |
tctcatcaaactgattcatctctagctatcaaatattcctctcctgcttgtacgtagtaggaaaaatgttacattaaatatcctttattacaatctctcc |
217 |
Q |
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| T |
39254237 |
tctcatcaaactgattcatctctagctatcaaatattcctctcctgcttgtacgtagcaggaaaaatgttacattaaatatcctttattacaatctctcc |
39254336 |
T |
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| Q |
218 |
tttttctccaacatttgttaattgtttcaattaacacctattcattatttatataatggagaaaaaggttgagaacgctatgattagctatgatccaaaa |
317 |
Q |
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| T |
39254337 |
tttttctccaacatttgttaattgtttcaattaacacctattcattatttatataatggagaaaaaggttgagaacgctatgattagctatgatccaaaa |
39254436 |
T |
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| Q |
318 |
tcaaaaacaaccctag |
333 |
Q |
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|||||||||||||||| |
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| T |
39254437 |
tcaaaaacaaccctag |
39254452 |
T |
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