View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_10 (Length: 510)

Name: NF5478_high_10
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_10
NF5478_high_10
[»] chr6 (2 HSPs)
chr6 (253-493)||(30702288-30702528)
chr6 (14-232)||(30700821-30701051)
[»] chr7 (3 HSPs)
chr7 (283-398)||(5291155-5291270)
chr7 (319-403)||(9064528-9064612)
chr7 (400-441)||(24658451-24658492)
[»] chr1 (2 HSPs)
chr1 (327-385)||(25516657-25516715)
chr1 (283-379)||(24155063-24155159)
[»] chr4 (2 HSPs)
chr4 (337-406)||(12605546-12605615)
chr4 (319-384)||(21817158-21817223)
[»] chr3 (1 HSPs)
chr3 (400-440)||(26285859-26285899)
[»] scaffold0040 (1 HSPs)
scaffold0040 (332-382)||(8844-8894)
[»] chr8 (1 HSPs)
chr8 (400-441)||(44873313-44873354)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 253 - 493
Target Start/End: Original strand, 30702288 - 30702528
Alignment:
Q  253 ctatgattacaacaattctaccacaaacacaaattcttattcatccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaat 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30702288 ctatgattacaacaattctaccacagacacaaattcttattcacccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaat 30702387  T
Q  353 atgtatagtcacatcattgatgttgatgatgagatatggaacatcattgaaaatcgtttactatccagttgttgaaaatgagttaaaattgtttgataca 452  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30702388 atgtacaatcacatcattgatgttgatgatgagatatggaacatcattgaaaatcgtttacaatccagttgttgaaaatgagttaaaattgtttgataca 30702487  T
Q  453 atacaactaaaatggaacaagatagtcatttaaccattgat 493  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  30702488 atacaactaaaatggaacaagatagtcatttaactattgat 30702528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 30700821 - 30701051
Alignment:
Q  14 aaatattgctaccactgcaattcacaagagagtctattaagaacacaatattcagttcaaaacttaacttgaggattccaagag-----ataagagccaa 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||     |||||||||||    
T  30700821 aaatattgcaaccactgcaattcacaagagagtctattaagaacacaatattcagttcaaaacttaacttgagtactccaagagatgacataagagccaa 30700920  T
Q  109 taaatacgcagtaaccagaaacaaagtgtcaggtagcaagggaagatgtcaatt-------agcaaactcaaatagcgtcataggagaattcgccaagaa 201  Q
     |||||||||||||||||||| |||||||||||||| ||||||||||| |||||       |||||||||||||||||||||||||||||| ||||||||    
T  30700921 aaaatacgcagtaaccagaaataaagtgtcaggtagtaagggaagatgccaattccaagtaagcaaactcaaatagcgtcataggagaattggccaagaa 30701020  T
Q  202 gaaaagtccctttgttgagaagctcttcaaa 232  Q
    |||||||||||||||||||||||||||||||    
T  30701021 gaaaagtccctttgttgagaagctcttcaaa 30701051  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 5291155 - 5291270
Alignment:
Q  283 aaattcttattcatccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgat 382  Q
    |||||| |||||  ||| |||||||  |||||||| |||| || ||||||||||||||||||||||||| ||||||| ||||||||| | | ||||||||    
T  5291155 aaattcatattctgccagaccttcgatcttcaatggagatgctgcacaattttcatggtggaaaagtaaaatgtataatcacatcatcggtcttgatgat 5291254  T
Q  383 gagatatggaacatca 398  Q
    ||| | ||| ||||||    
T  5291255 gagttgtgggacatca 5291270  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 403
Target Start/End: Complemental strand, 9064612 - 9064528
Alignment:
Q  319 agatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgatgagatatggaacatcattgaa 403  Q
    |||| ||||| | ||||| |||||||||||||| ||||||||||| ||||||| |||||| |||||  | |||||||||||||||    
T  9064612 agatcctacaaagttttcttggtggaaaagtaagatgtatagtcatatcattggtgttgaagatgaactttggaacatcattgaa 9064528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 24658451 - 24658492
Alignment:
Q  400 tgaaaatcgtttactatccagttgttgaaaatgagttaaaat 441  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  24658451 tgaaaatcgtttcctatccatttgttgaaaatgagttaaaat 24658492  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 25516715 - 25516657
Alignment:
Q  327 cacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgatgag 385  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||    
T  25516715 cacaattttcttggtggaaaagaaaaatgtatagtcacgtcattgatgttgatgatgag 25516657  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 379
Target Start/End: Original strand, 24155063 - 24155159
Alignment:
Q  283 aaattcttattcatccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgat 379  Q
    ||||||||||| |||   |||| | || ||||||| |||| ||  ||||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  24155063 aaattcttatttatctggacctccatctttcaatggagatgctgaacaattttcttggtggaaaagcaagatgtatagtcacatcattgatattgat 24155159  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 12605615 - 12605546
Alignment:
Q  337 atggtggaaaagtaatatgtatagtcacatcattgatgttgatgatgagatatggaacatcattgaaaat 406  Q
    |||||||||||| || ||||||||||| ||| || | |||||||||||| ||||  ||||||||||||||    
T  12605615 atggtggaaaaggaagatgtatagtcatatctttaaagttgatgatgagttatgagacatcattgaaaat 12605546  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 21817158 - 21817223
Alignment:
Q  319 agatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgatga 384  Q
    |||| |||| ||||||||||| |||||||| || ||||| ||| |||||| |||||||||||||||    
T  21817158 agatgctactcaattttcatgatggaaaagcaagatgtacagttacatcaatgatgttgatgatga 21817223  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 26285899 - 26285859
Alignment:
Q  400 tgaaaatcgtttactatccagttgttgaaaatgagttaaaa 440  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  26285899 tgaaaatcgtttcctatccatttgttgaaaatgagttaaaa 26285859  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 8844 - 8894
Alignment:
Q  332 ttttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgat 382  Q
    |||||||| ||||| ||||| ||||||||||||||||| || |||||||||    
T  8844 ttttcatgatggaagagtaagatgtatagtcacatcatagaagttgatgat 8894  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 44873313 - 44873354
Alignment:
Q  400 tgaaaatcgtttactatccagttgttgaaaatgagttaaaat 441  Q
    |||||||||| | ||||||| |||||||||||||||||||||    
T  44873313 tgaaaatcgtcttctatccatttgttgaaaatgagttaaaat 44873354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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