View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_13 (Length: 493)
Name: NF5478_high_13
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Original strand, 37768114 - 37768577
Alignment:
| Q |
11 |
caaaggtactactcataagtgcttgtttgtctaatcaccaaaacaaaatctttgcaggccttaacctcaatattctctcgtcaaatgcaaagtgctcctc |
110 |
Q |
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| T |
37768114 |
caaaggtactactcataagtgcgtgtttgtctaatcaccaaaacaaaatctttgcaggccttaacctcaatattctctcgtcaaatgcaaagtgctcctc |
37768213 |
T |
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| Q |
111 |
tttattttcgtccttaattttattccttgatattgactcaataatatatatacacattcttctaatctcaaactctctaaaaccctttatcactactcat |
210 |
Q |
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| T |
37768214 |
tttattttcgtccttaattttattccttgatattgactcaataatatatatacacattcttctaatctcgaactctctaaaaccctttaccactacttat |
37768313 |
T |
|
| Q |
211 |
tagtatcatcatcaactcctttctcaaacttacacaacttagaaaattatgaagagtgtttcaaaaaacaagttcttaacatgttttcgtcctgtcattg |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37768314 |
tagtatca---tcaactcctttctcaaacttacacaacttagaaaattatgaagagtgtttcaaaaaacaagttcttaacatgttttcgtcctgtcattg |
37768410 |
T |
|
| Q |
311 |
atttagatgacatgcttgaatctgaaactgtccctgctccctctactagtcgtcgtaaacacgcaacacaaaattcagcaaccaattcgatgtctccgga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37768411 |
atttagatgacatgcttgaatctgaaactgtccctgctccctctactagtcgtcgtaaacacgcaacacaaaattcagcaaccaattcgatgtctctgga |
37768510 |
T |
|
| Q |
411 |
ccaaaattctccgaaatcgatacaaaatcaggttgctggtcatcctccaaaacaaacactttctaag |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37768511 |
ccaaaattctccgaaatcgatacaaaatcaggttgctggtcatcctccaaaacaaacactttctaag |
37768577 |
T |
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