View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_16 (Length: 450)

Name: NF5478_high_16
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_16
NF5478_high_16
[»] chr4 (29 HSPs)
chr4 (25-436)||(4609193-4609604)
chr4 (215-409)||(42398471-42398660)
chr4 (294-428)||(24637740-24637877)
chr4 (369-428)||(26510422-26510481)
chr4 (365-411)||(54983110-54983156)
chr4 (364-428)||(47044459-47044523)
chr4 (288-344)||(54983205-54983261)
chr4 (378-421)||(32006976-32007019)
chr4 (288-398)||(28808419-28808528)
chr4 (378-428)||(34409967-34410017)
chr4 (378-428)||(53451069-53451119)
chr4 (369-428)||(34035706-34035765)
chr4 (340-430)||(19545414-19545504)
chr4 (378-420)||(50561448-50561490)
chr4 (369-421)||(34659085-34659137)
chr4 (214-254)||(54983297-54983337)
chr4 (370-421)||(10727236-10727287)
chr4 (370-421)||(10941005-10941056)
chr4 (369-428)||(43317444-43317503)
chr4 (378-428)||(23019573-23019623)
chr4 (378-428)||(31135077-31135127)
chr4 (370-428)||(37143508-37143566)
chr4 (378-428)||(40314812-40314862)
chr4 (378-428)||(40324888-40324938)
chr4 (214-252)||(47044306-47044344)
chr4 (288-344)||(18362865-18362920)
chr4 (289-337)||(19545518-19545566)
chr4 (369-421)||(34334770-34334822)
chr4 (288-344)||(36600006-36600061)
[»] chr1 (33 HSPs)
chr1 (273-411)||(32591280-32591416)
chr1 (212-411)||(15474839-15475037)
chr1 (217-410)||(48420336-48420530)
chr1 (311-402)||(777276-777367)
chr1 (368-421)||(13281209-13281262)
chr1 (288-344)||(18115816-18115872)
chr1 (218-332)||(18115891-18116004)
chr1 (369-438)||(36605709-36605778)
chr1 (378-421)||(13315386-13315429)
chr1 (369-411)||(23773554-23773596)
chr1 (326-420)||(27579553-27579647)
chr1 (378-411)||(15596784-15596817)
chr1 (212-253)||(25182594-25182635)
chr1 (379-428)||(43416086-43416135)
chr1 (386-430)||(898739-898783)
chr1 (369-428)||(13309235-13309294)
chr1 (346-421)||(17504360-17504435)
chr1 (215-258)||(27579308-27579351)
chr1 (378-428)||(8209624-8209674)
chr1 (378-428)||(17580038-17580088)
chr1 (369-411)||(42676550-42676592)
chr1 (297-428)||(43019763-43019888)
chr1 (288-334)||(44066555-44066601)
chr1 (378-428)||(48455119-48455169)
chr1 (365-414)||(25222765-25222814)
chr1 (225-258)||(43879990-43880023)
chr1 (369-421)||(12266770-12266822)
chr1 (288-344)||(25182675-25182731)
chr1 (212-252)||(25222661-25222701)
chr1 (365-409)||(27928599-27928643)
chr1 (213-257)||(32591223-32591267)
chr1 (369-409)||(34555283-34555323)
chr1 (211-255)||(43019928-43019972)
[»] chr7 (32 HSPs)
chr7 (289-419)||(22701633-22701762)
chr7 (288-410)||(48103043-48103165)
chr7 (288-408)||(39522800-39522923)
chr7 (213-428)||(7809623-7809840)
chr7 (287-428)||(39465466-39465611)
chr7 (369-428)||(36251527-36251586)
chr7 (378-428)||(39786363-39786413)
chr7 (288-408)||(27484357-27484466)
chr7 (369-421)||(4785646-4785698)
chr7 (369-421)||(4818646-4818698)
chr7 (365-421)||(14553676-14553732)
chr7 (218-258)||(29693294-29693334)
chr7 (365-420)||(1460418-1460473)
chr7 (369-428)||(17038329-17038388)
chr7 (273-332)||(24034498-24034557)
chr7 (368-428)||(9334530-9334590)
chr7 (368-428)||(29693207-29693266)
chr7 (378-409)||(3531001-3531032)
chr7 (369-428)||(19396869-19396928)
chr7 (379-430)||(26710378-26710429)
chr7 (370-421)||(27724956-27725007)
chr7 (369-428)||(30908435-30908494)
chr7 (369-428)||(48109469-48109528)
chr7 (378-428)||(7468646-7468696)
chr7 (378-428)||(9412446-9412496)
chr7 (378-428)||(25834353-25834403)
chr7 (378-428)||(27250552-27250602)
chr7 (378-428)||(27723083-27723133)
chr7 (378-411)||(4996126-4996159)
chr7 (378-411)||(15994432-15994465)
chr7 (368-409)||(40417373-40417414)
chr7 (379-407)||(12328376-12328404)
[»] chr2 (22 HSPs)
chr2 (294-428)||(31555615-31555747)
chr2 (365-427)||(17640957-17641019)
chr2 (288-356)||(17874429-17874497)
chr2 (368-428)||(42444398-42444458)
chr2 (365-428)||(5879976-5880038)
chr2 (378-413)||(19133173-19133208)
chr2 (369-408)||(27912913-27912952)
chr2 (369-420)||(37867467-37867518)
chr2 (369-420)||(39809261-39809312)
chr2 (369-420)||(40301797-40301848)
chr2 (365-428)||(42651709-42651772)
chr2 (378-428)||(15248974-15249024)
chr2 (378-428)||(16039173-16039223)
chr2 (288-342)||(17873069-17873123)
chr2 (378-428)||(29462611-29462661)
chr2 (371-428)||(33134906-33134963)
chr2 (365-409)||(740906-740950)
chr2 (379-411)||(3171647-3171679)
chr2 (369-437)||(9243846-9243914)
chr2 (230-258)||(17640816-17640844)
chr2 (369-421)||(21566032-21566084)
chr2 (369-421)||(25915377-25915429)
[»] chr5 (18 HSPs)
chr5 (273-411)||(30841202-30841337)
chr5 (281-428)||(35583297-35583444)
chr5 (276-337)||(25536539-25536600)
chr5 (288-411)||(26620979-26621104)
chr5 (370-428)||(19288990-19289048)
chr5 (379-421)||(16312817-16312859)
chr5 (369-421)||(28400189-28400241)
chr5 (313-404)||(38098946-38099038)
chr5 (369-428)||(1612169-1612228)
chr5 (369-428)||(8839665-8839724)
chr5 (369-420)||(25536460-25536511)
chr5 (367-421)||(1093642-1093696)
chr5 (370-428)||(7464281-7464339)
chr5 (212-262)||(25536617-25536666)
chr5 (378-428)||(27174996-27175046)
chr5 (369-410)||(15341479-15341520)
chr5 (223-256)||(35583236-35583269)
chr5 (378-418)||(10542847-10542887)
[»] chr8 (20 HSPs)
chr8 (288-436)||(9187383-9187530)
chr8 (273-428)||(9788558-9788708)
chr8 (288-411)||(24411925-24412048)
chr8 (211-344)||(32345154-32345285)
chr8 (211-344)||(32361762-32361893)
chr8 (369-428)||(11929810-11929869)
chr8 (369-428)||(11941424-11941483)
chr8 (369-428)||(15044473-15044532)
chr8 (222-428)||(31267895-31268097)
chr8 (288-336)||(37370069-37370117)
chr8 (369-420)||(4535793-4535844)
chr8 (369-428)||(13369336-13369395)
chr8 (369-420)||(42862472-42862523)
chr8 (370-428)||(1759738-1759796)
chr8 (370-428)||(16822922-16822980)
chr8 (370-428)||(28969827-28969885)
chr8 (212-252)||(9187569-9187609)
chr8 (381-421)||(13575748-13575788)
chr8 (365-421)||(16243549-16243605)
chr8 (369-409)||(23085788-23085828)
[»] scaffold1017 (1 HSPs)
scaffold1017 (288-427)||(2344-2484)
[»] scaffold0092 (1 HSPs)
scaffold0092 (288-409)||(6515-6637)
[»] chr6 (14 HSPs)
chr6 (281-411)||(14912171-14912301)
chr6 (369-428)||(13240894-13240953)
chr6 (288-428)||(4965643-4965784)
chr6 (369-428)||(23124255-23124314)
chr6 (288-411)||(19707486-19707612)
chr6 (378-421)||(26306456-26306499)
chr6 (370-426)||(2441258-2441314)
chr6 (215-258)||(4965556-4965599)
chr6 (369-428)||(9894596-9894655)
chr6 (369-428)||(14426430-14426489)
chr6 (369-428)||(17942293-17942352)
chr6 (215-251)||(14912079-14912115)
chr6 (369-421)||(17829620-17829672)
chr6 (378-422)||(30591104-30591148)
[»] chr3 (17 HSPs)
chr3 (364-430)||(14770949-14771015)
chr3 (309-430)||(21967207-21967319)
chr3 (309-430)||(21989643-21989755)
chr3 (288-403)||(21082630-21082747)
chr3 (369-428)||(23267846-23267905)
chr3 (212-428)||(13475398-13475617)
chr3 (368-420)||(21495407-21495459)
chr3 (369-421)||(49758590-49758642)
chr3 (369-428)||(19468231-19468290)
chr3 (384-438)||(49429976-49430030)
chr3 (273-321)||(14770866-14770914)
chr3 (370-428)||(17589982-17590040)
chr3 (370-428)||(18875278-18875336)
chr3 (378-428)||(45879613-45879663)
chr3 (364-409)||(20838039-20838084)
chr3 (369-421)||(7791453-7791505)
chr3 (369-413)||(30806075-30806119)
[»] scaffold0013 (2 HSPs)
scaffold0013 (324-427)||(101338-101441)
scaffold0013 (273-321)||(101474-101522)
[»] scaffold0154 (1 HSPs)
scaffold0154 (369-428)||(32809-32868)
[»] scaffold0029 (1 HSPs)
scaffold0029 (288-332)||(72715-72759)
[»] scaffold0734 (1 HSPs)
scaffold0734 (365-428)||(4200-4263)
[»] scaffold0128 (1 HSPs)
scaffold0128 (369-428)||(43308-43367)
[»] scaffold0068 (1 HSPs)
scaffold0068 (369-409)||(57295-57335)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 25 - 436
Target Start/End: Complemental strand, 4609604 - 4609193
Alignment:
Q  25 agagagagtatcgatggaaaaggcagcatcgtgaaaccattcatggaagagcaacgcgaaaccaaattggaacatacaaagtacttattatcaaagctca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  4609604 agagagagtatcgatggaaaaggcagcatcgtgaaaccattcatggaagagcatcgtgaaaccaaattggaacatacaaagtacttattatcaaagctca 4609505  T
Q  125 catggaattgggaaatcaaaatgcttttgcgatggaatatacttgatttagtttgttacagnnnnnnnaaggataaatgnnnnnnnttggacatatattc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         |||||||||||        |||||||||||||    
T  4609504 catggaattgggaaatcaaaatgcttttgcgatggaatatacttgatctagtttgttacgttttttttaaggataaatgaaaaaaactggacatatattc 4609405  T
Q  225 atatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacactttttcaatatttaaattcactctcatccattatctt 324  Q
    ||||||||||| | |||| |||||||||||||||||||          || ||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  4609404 atatcatgtttttaacacaatatattttgtgtggaaacaaaaaaaaaattatgttcgttacattttttaaatatttaaattcactcttatccattatctt 4609305  T
Q  325 ttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaat 424  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4609304 ttttaaatgataacgaaaaattcagacatataaaatttgatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaat 4609205  T
Q  425 tgaatgatgatg 436  Q
    ||||||||||||    
T  4609204 tgaatgatgatg 4609193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 409
Target Start/End: Original strand, 42398471 - 42398660
Alignment:
Q  215 acatatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacactttttcaatatttaaattcactctcat 314  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||| ||            |||||| |||||| |||||  |||||| ||| ||||||| |    
T  42398471 acatatactcatatcgtgtttgtcacacgatatattttgtgtggcaaaaaaaag-----tgtgtttgttacatttttttgatatttgaatccactctctt 42398565  T
Q  315 ccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttat 409  Q
      |||||||||||||||| ||||  ||||| ||||||||| |||||  | |||||||||||| ||||||| |||  |||||||||||||||||||    
T  42398566 taattatcttttttaaattataagaaaaaaatcagacatacaaaatttgttacattttgttttaatatttaaatacactcttatctatttgttat 42398660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 294 - 428
Target Start/End: Complemental strand, 24637877 - 24637740
Alignment:
Q  294 aatatttaaattcactctca--tccattatcttttttaaatgataatga-aaaattcagacatataaaataggatacattttgtttgaatatttgaattt 390  Q
    ||||||| |||||| |||||  |||| ||||||||||||||||||| || |||| ||||| ||||| |||  | ||||||  |||| |||||||||||||    
T  24637877 aatatttgaattcattctcacatccactatcttttttaaatgataaggataaaaatcagagatatacaatttgttacattgggtttcaatatttgaattt 24637778  T
Q  391 actcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||||||||||||| ||| || |||||| ||||||    
T  24637777 actcttatctatttgttgtatgtgttatttgtattgaa 24637740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 26510422 - 26510481
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  26510422 ttttattttaatatttgaatttactcttatctatttgttatatgtgatatttgtattgaa 26510481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 54983156 - 54983110
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatat 411  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  54983156 tacattttgttttaatatttgaatttactcttatctatttgttatat 54983110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 47044459 - 47044523
Alignment:
Q  364 atacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||| || |||||| ||||||    
T  47044459 atacaatttgttttaatatttgaatttactcttatatatttgttatatgtgctatttgtattgaa 47044523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 54983261 - 54983205
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaa 344  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||    
T  54983261 ttttttaatatttgaattaactctcatccattatcttttttaaatgataaggaaaaa 54983205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 32006976 - 32007019
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  32006976 aatatttgaatttactcttatctatttgttatatatgttatttg 32007019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 28808528 - 28808419
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaa 387  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||||||||| ||||||  | |||||||| | |    |||| ||||||| ||||||||||    
T  28808528 ttttttaatatttgaatttactttcatccattatcttttttaaatgataaggaaaaaaacggacatatacagtttattaca-tttgttttaatatttgaa 28808430  T
Q  388 tttactcttat 398  Q
    ||| |||||||    
T  28808429 ttttctcttat 28808419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 34409967 - 34410017
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  34409967 aatatttgaatttactcttatctatttgttatatgtgttatttgtattgaa 34410017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 53451119 - 53451069
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  53451119 aatatttgaatttactcttatctatttgttatatgtgttatttgtattgaa 53451069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 34035765 - 34035706
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||||||||||  |||||||||||||||||| || |||||||||||||    
T  34035765 ttttattttaatatttgaatttatccttatctatttgttatatgtgttatttgaattgaa 34035706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 19545504 - 19545414
Alignment:
Q  340 aaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaatg 430  Q
    ||||| ||||||||||| | |  | |||||||| ||| ||||||| ||||||||||||| ||||| |||||| || |||||| ||||||||    
T  19545504 aaaaaatcagacatatacagtttgttacattttattttaatatttaaatttactcttatatatttcttatatgtgctatttgcattgaatg 19545414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 420
Target Start/End: Original strand, 50561448 - 50561490
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  50561448 aatatttaaatttactcttatctatttattatatatgatattt 50561490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 34659137 - 34659085
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| ||||||||||||||| |||||||||||||||||| || ||||||    
T  34659137 ttttatttcaatatttgaatttacacttatctatttgttatatgtgttatttg 34659085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 54983337 - 54983297
Alignment:
Q  214 gacatatattcatatcatgtttgttacacgatatattttgt 254  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  54983337 gacatatattaatatcgtgtttgttacacgatatattttgt 54983297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 10727287 - 10727236
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||    
T  10727287 tttgttttaatatttaaatttactcttatatatttgttacatatgttatttg 10727236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 10941056 - 10941005
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||    
T  10941056 tttgttttaatatttaaatttactcttatatatttgttacatatgttatttg 10941005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 43317503 - 43317444
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||| ||||||| |||||| |||||||||||||||| || || |||||| ||||||    
T  43317503 ttttgttttaatatttaaatttattcttatctatttgttacatgtgttatttgtattgaa 43317444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 23019573 - 23019623
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| ||||||||||||||||||| || |||||| ||||||    
T  23019573 aatatttaaatttattcttatctatttgttatatgtgttatttgtattgaa 23019623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 31135127 - 31135077
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| |||||||||||||||| || ||||||||| ||||||    
T  31135127 aatatttaaatttattcttatctatttgttacatgtgatatttgtattgaa 31135077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 37143508 - 37143566
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| |||||| |||||||||||||||| || || |||||| ||||||    
T  37143508 tttgttttaatatttaaatttattcttatctatttgttacatgtgttatttgtattgaa 37143566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 40314812 - 40314862
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| ||||||||||||||||||| || |||||| ||||||    
T  40314812 aatatttaaatttattcttatctatttgttatatgtgttatttgtattgaa 40314862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 40324888 - 40324938
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| ||||||||||||||||||| || |||||| ||||||    
T  40324888 aatatttaaatttattcttatctatttgttatatgtgttatttgtattgaa 40324938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 47044306 - 47044344
Alignment:
Q  214 gacatatattcatatcatgtttgttacacgatatatttt 252  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  47044306 gacatatactcatatcatgtttgttatacgatatatttt 47044344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 18362865 - 18362920
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaa 344  Q
    ||||| |||| || ||||||||||||||| ||||| |||||||||||||| ||||||    
T  18362865 ttttttaatagttgaattcactctcatccgttatc-tttttaaatgataaggaaaaa 18362920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 19545566 - 19545518
Alignment:
Q  289 ttttcaatatttaaattcactctcatccattatcttttttaaatgataa 337  Q
    |||| ||||||| ||||||| ||||||||||||||| ||| ||||||||    
T  19545566 tttttaatatttgaattcacactcatccattatcttctttgaatgataa 19545518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 34334822 - 34334770
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| |||||||||||||||| |||||||||| |||||| || ||||||    
T  34334822 ttttattttaatatttgaatttacttttatctatttattatatttgttatttg 34334770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 36600061 - 36600006
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaa 344  Q
    ||||| |||| || ||||||||||||||| ||||| |||||||||||||| ||||||    
T  36600061 ttttttaatagttgaattcactctcatccgttatc-tttttaaatgataaggaaaaa 36600006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 411
Target Start/End: Original strand, 32591280 - 32591416
Alignment:
Q  273 ttgtgttcgttacactttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacatttt 372  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| ||  |||||||||||    ||||||||    
T  32591280 ttgtgtttgttacacttttt-aatatttaaattcactctcatccattat-ttttttaaatgataaagaaaaaatcgaacatataaaatttattacatttt 32591377  T
Q  373 gtttgaatatttgaatttactcttatctatttgttatat 411  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  32591378 gttttaatatttgaatttacttttatctatttgttatat 32591416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 212 - 411
Target Start/End: Complemental strand, 15475037 - 15474839
Alignment:
Q  212 tggacatatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacactttttcaatatttaaattcactct 311  Q
    |||||||||  |||||||||||||||||||||||||||||| ||| | | |          ||||||| |||| | ||||| ||||||| ||||||||||    
T  15475037 tggacatatgctcatatcatgtttgttacacgatatattttttgttgtaccaaaaataatattgtgtttgtta-atttttttaatatttgaattcactct 15474939  T
Q  312 catccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttatat 411  Q
    ||||| ||||| |||||||||||||| |||||| || |||||||| |||  | |||||||||||| ||||||| |||||| |||||| ||||| ||||||    
T  15474938 catccgttatcatttttaaatgataaggaaaaaatcggacatatataatttgttacattttgttttaatatttaaatttattcttatatatttcttatat 15474839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 410
Target Start/End: Complemental strand, 48420530 - 48420336
Alignment:
Q  217 atatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacactttttc-aatatttaaattcactctcatc 315  Q
    ||||| ||||||| |||||||||||||||||||||||| ||| |||          || |||| ||||||||||||  ||||||| | ||  ||||||||    
T  48420530 atatactcatatcgtgtttgttacacgatatattttgtctggtaacaaaaaaaa--ttatgtttgttacactttttttaatatttgactttgctctcatc 48420433  T
Q  316 cattatctttttt-aaatgataatgaaaaattcag-acatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttata 410  Q
    ||||||||||||| ||||||||| ||||||    | ||||||   ||  | |||||||||||| |||||||||||||||||||||||||||||||||    
T  48420432 cattatctttttttaaatgataaggaaaaaaaatggacatatgctatctgttacattttgttttaatatttgaatttactcttatctatttgttata 48420336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 777276 - 777367
Alignment:
Q  311 tcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctat 402  Q
    ||||||||||| ||||||||||||||| |||||| || || ||||| | |  | |||||||||||| |||||||||||||||| ||||||||    
T  777276 tcatccattattttttttaaatgataaagaaaaaatcggatatatatagtttgttacattttgttttaatatttgaatttacttttatctat 777367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 13281209 - 13281262
Alignment:
Q  368 attttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  13281209 attttattttaatatttgaatttactcttatttatttgttatatatgatatttg 13281262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 18115872 - 18115816
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaa 344  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||    
T  18115872 ttttttaatatttaaattcactctcatccattatcttttttgaatgatgaggaaaaa 18115816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 18116004 - 18115891
Alignment:
Q  218 tatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacactttttcaatatttaaattcactctcatcca 317  Q
    |||||||||||| |||||||||||||||||||||||||||| |||          | ||||| |||| | |||||   ||||| ||||||||||||||||    
T  18116004 tatattcatatcgtgtttgttacacgatatattttgtgtggcaac-aaaaaataatagtgtttgttagattttttttctatttgaattcactctcatcca 18115906  T
Q  318 ttatcttttttaaat 332  Q
    |||||||||||||||    
T  18115905 ttatcttttttaaat 18115891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 36605709 - 36605778
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaatgatgatgat 438  Q
    |||| ||| |||||||| |||| |||||||||||||||||||| || |||||| |||||||| |||||||    
T  36605709 ttttattttaatatttgcatttcctcttatctatttgttatatgtgttatttgtattgaatgttgatgat 36605778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 13315386 - 13315429
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  13315386 aatatttaaatttactcttatctatttgttatatatgttatttg 13315429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 23773554 - 23773596
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatat 411  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  23773554 ttttattttaatatttgaatttactcttatctatttgttatat 23773596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 420
Target Start/End: Original strand, 27579553 - 27579647
Alignment:
Q  326 tttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    |||||||||||| |||||| || |||||||| | |  | ||||||||| || ||||||| |||| |||||||||||||| |||||| || |||||    
T  27579553 tttaaatgataaggaaaaaatcggacatatacagtttgttacattttgctttaatatttaaattcactcttatctatttattatatgtgttattt 27579647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 15596817 - 15596784
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatat 411  Q
    ||||||||||||||||||||||||||||||||||    
T  15596817 aatatttgaatttactcttatctatttgttatat 15596784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 25182594 - 25182635
Alignment:
Q  212 tggacatatattcatatcatgtttgttacacgatatattttg 253  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  25182594 tggacatatactcatatcatgtttattacacgatatattttg 25182635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 43416086 - 43416135
Alignment:
Q  379 atatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||||||||||||||||| ||||||||||| || |||||| ||||||    
T  43416086 atatttgaatttactcttatcaatttgttatatgtgttatttgcattgaa 43416135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 898783 - 898739
Alignment:
Q  386 aatttactcttatctatttgttatatatgatatttgaattgaatg 430  Q
    |||||||||||||||||||||||||| || |||||| ||||||||    
T  898783 aatttactcttatctatttgttatatgtgctatttgtattgaatg 898739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 13309294 - 13309235
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||||||||| ||||||||||||| |||||| || |||||| ||||||    
T  13309294 ttttattttaatatttgaattttctcttatctatttattatatgtgttatttgtattgaa 13309235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 17504435 - 17504360
Alignment:
Q  346 tcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||||||||| |||  | |||||||| ||| ||||||||| |||| | ||||||||||||||||| || ||||||    
T  17504435 tcagacatatacaatttgttacattttattttaatatttgagtttatttttatctatttgttatatgtgttatttg 17504360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 27579308 - 27579351
Alignment:
Q  215 acatatattcatatcatgtttgttacacgatatattttgtgtgg 258  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||    
T  27579308 acatatactcatattatgtttgttgcacgatatattttgtgtgg 27579351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 8209624 - 8209674
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||||||||| |||||| |||||||||||| || |||||| ||||||    
T  8209624 aatatttgaatttattcttatgtatttgttatatgtgctatttgtattgaa 8209674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 17580038 - 17580088
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| |||||||||||||||| ||||| |||||| ||||||    
T  17580038 aatatttaaatttattcttatctatttgttacatatgttatttgtattgaa 17580088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 42676592 - 42676550
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatat 411  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||    
T  42676592 ttttattttaatatttgaatttacccttatctatttgttatat 42676550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 428
Target Start/End: Complemental strand, 43019888 - 43019763
Alignment:
Q  297 atttaaattcactctcatccattatcttttttaaatgataatgaaaaat-tcagacatataaaataggatacattttgtttgaata---tttgaatttac 392  Q
    |||| |||||||||||||| ||||| |||||||||||||||  |||||  |||||||||||          |||||||||| ||||   ||| |||||||    
T  43019888 atttgaattcactctcatcaattattttttttaaatgataagcaaaaaaatcagacatata----------cattttgttttaatagtatttaaatttac 43019799  T
Q  393 tcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||||||| |||||| ||||||| | ||||||    
T  43019798 tcttatctatttattatatgtgatattcgtattgaa 43019763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 44066555 - 44066601
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatga 334  Q
    ||||| ||||||| ||||||||||||||  |||||||||||||||||    
T  44066555 ttttttaatatttgaattcactctcatctgttatcttttttaaatga 44066601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 48455169 - 48455119
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| |||||||||||||| | ||||| |||||||||||||    
T  48455169 aatatttaaatttattcttatctatttgtcacatatgttatttgaattgaa 48455119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 25222765 - 25222814
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatg 414  Q
    ||||||||| || ||||||||||||||  ||||||| |||||||||||||    
T  25222765 tacattttggtttaatatttgaatttatacttatctgtttgttatatatg 25222814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 43880023 - 43879990
Alignment:
Q  225 atatcatgtttgttacacgatatattttgtgtgg 258  Q
    ||||| ||||||||||||||||||||||||||||    
T  43880023 atatcgtgtttgttacacgatatattttgtgtgg 43879990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 12266822 - 12266770
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| ||||||| | |||||||||||||||||||||||| || ||||||    
T  12266822 ttttattttaatatttaagtttactcttatctatttgttatatgtgttatttg 12266770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 25182675 - 25182731
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaa 344  Q
    ||||| || |||| ||||| || ||||| ||||||||||||||||||||| ||||||    
T  25182675 ttttttaacatttgaattcgctttcatctattatcttttttaaatgataaggaaaaa 25182731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 25222661 - 25222701
Alignment:
Q  212 tggacatatattcatatcatgtttgttacacgatatatttt 252  Q
    ||||||||||  |||||||||||| ||||||||||||||||    
T  25222661 tggacatatacacatatcatgtttattacacgatatatttt 25222701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 27928599 - 27928643
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttat 409  Q
    |||||||| ||| ||||||| ||||||||||||| ||||||||||    
T  27928599 tacatttttttttaatattttaatttactcttatttatttgttat 27928643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 32591223 - 32591267
Alignment:
Q  213 ggacatatattcatatcatgtttgttacacgatatattttgtgtg 257  Q
    ||||||||||||||||| ||||||||||  || ||||||||||||    
T  32591223 ggacatatattcatatcgtgtttgttacttgaaatattttgtgtg 32591267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 34555323 - 34555283
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttat 409  Q
    |||| ||| ||||||||||||||||||||| ||||||||||    
T  34555323 ttttattttaatatttgaatttactcttatgtatttgttat 34555283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 43019972 - 43019928
Alignment:
Q  211 ttggacatatattcatatcatgtttgttacacgatatattttgtg 255  Q
    ||||||||||||||||||| || | |||||| |||||||||||||    
T  43019972 ttggacatatattcatatcgtgctcgttacatgatatattttgtg 43019928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 22701762 - 22701633
Alignment:
Q  289 ttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaat 388  Q
    |||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||  | |||||||| ||| |||||||||||    
T  22701762 ttttaaatatttgaattcactctcatccattatcttttttaaacgataaggaaaaaa-cagacatatacaatttgttacattttattttaatatttgaat 22701664  T
Q  389 ttactcttatctatttgttatatatgatatt 419  Q
    ||||||||||||||||||||||| |||||||    
T  22701663 ttactcttatctatttgttatatgtgatatt 22701633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 410
Target Start/End: Complemental strand, 48103165 - 48103043
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaa 387  Q
    ||||| ||||||| ||||||||||| || ||||||||||| ||||||||| |||||| |  || ||||| |||  |  ||||||||||| ||||||||||    
T  48103165 ttttttaatatttgaattcactctcgtctattatctttttaaaatgataaggaaaaaataggatatatataatttgtcacattttgttttaatatttgaa 48103066  T
Q  388 tttactcttatctatttgttata 410  Q
    ||||||||||||||||| |||||    
T  48103065 tttactcttatctattttttata 48103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 39522923 - 39522800
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaatt---cagacatataaaataggatacattttgtttgaatattt 384  Q
    ||||| ||||||| |||||||| ||||||||| |||||||||||||| || |||||| |   |||| ||||| |||| | ||||||||||||  ||||||    
T  39522923 ttttttaatatttgaattcactttcatccattgtcttttttaaatgaaaaggaaaaaataatcagaaatatacaatatgttacattttgttttgatattt 39522824  T
Q  385 gaatttactcttatctatttgtta 408  Q
    ||| ||||||||||||||||||||    
T  39522823 gaaattactcttatctatttgtta 39522800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 428
Target Start/End: Complemental strand, 7809840 - 7809623
Alignment:
Q  213 ggacatatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacac-tttttcaatatttaaattcactct 311  Q
    ||||||||| |||||| ||||||||||||| |||||||||||| || |||          |||||||  |||||  ||||| |||||||||||||| |||    
T  7809840 ggacatatactcatattatgtttgttacaccatatattttgtgcggtaacaaaaacaa--ttgtgtttattacaaattttttaatatttaaattcagtct 7809743  T
Q  312 catccattatcttttttaaatgataatgaaaaattcagacatataaaa----taggatacattttgtttgaatatttgaatttactcttatctatttgtt 407  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||| ||    |  | || ||||| ||| ||||||| ||||||||||||||| ||||||    
T  7809742 catcctttatcttttttaaatgataaggaaaaaatcagatatatagaatttgtttgttatatttt-ttttaatatttaaatttactcttatctgtttgtt 7809644  T
Q  408 atatatgatatttgaattgaa 428  Q
    ||||||  |||||| ||||||    
T  7809643 atatatattatttgtattgaa 7809623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 428
Target Start/End: Original strand, 39465466 - 39465611
Alignment:
Q  287 ctttttcaatatttaaattcactctcatccattatcttttttaaatgataatg----aaaaattcagacatataaaataggatacattttgtttgaatat 382  Q
    |||||| ||||||| ||||||||||| | |||||||||||||||||||||| |    ||||| ||| ||||||| |||     | |||| |||| |||||    
T  39465466 cttttttaatatttgaattcactctcgtacattatcttttttaaatgataaggaaaaaaaaaatcaaacatatacaatttttaagatttcgttttaatat 39465565  T
Q  383 ttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||||||| ||||||||||||||||| |  |||||| ||||||    
T  39465566 ttgaatttacttttatctatttgttatatgtattatttgtattgaa 39465611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 36251586 - 36251527
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  36251586 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaa 36251527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 39786413 - 39786363
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  39786413 aatatttgaatttactcttatctatttgttatatgtgttatttgtattgaa 39786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 27484357 - 27484466
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaa 387  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||| ||||| |||||| || |||| |||          |||||||||| ||||||||||    
T  27484357 ttttttaatatttgaatttactttcatccattatcttttttaaacgataa-gaaaaaatcggacacata----------cattttgttttaatatttgaa 27484445  T
Q  388 tttactcttatctatttgtta 408  Q
    |||| ||||||||||||||||    
T  27484446 tttaatcttatctatttgtta 27484466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 4785646 - 4785698
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||||||||||||||||||||||||||||||| |||||| || ||||||    
T  4785646 ttttatttgaatatttgaatttactcttatctatttattatatgtgctatttg 4785698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 4818646 - 4818698
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||||||||||||||||||||||||||||||| |||||| || ||||||    
T  4818646 ttttatttgaatatttgaatttactcttatctatttattatatgtgctatttg 4818698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 14553676 - 14553732
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||| || ||||||    
T  14553676 tacattatttttgaatatttgaatttacttttatctatttgttatatgtgctatttg 14553732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 29693334 - 29693294
Alignment:
Q  218 tatattcatatcatgtttgttacacgatatattttgtgtgg 258  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  29693334 tatattcatatcgtgtttgttacacgatatattttgtgtgg 29693294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 1460473 - 1460418
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||| || |||||    
T  1460473 tacattttgtttaaatatttgaatttactattatatatttgttatatgtgttattt 1460418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 17038388 - 17038329
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||  ||||| ||||||    
T  17038388 ttttattttaatatttgaatttactcttatctatttgttatatgtgcaatttgtattgaa 17038329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 24034498 - 24034557
Alignment:
Q  273 ttgtgttcgttacactttttcaatatttaaattcactctcatccattatcttttttaaat 332  Q
    ||||||| |||||||||||| ||||||| ||||| ||||||| |||||| ||||||||||    
T  24034498 ttgtgtttgttacacttttttaatatttgaattcgctctcattcattatattttttaaat 24034557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 9334590 - 9334530
Alignment:
Q  368 attttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||| ||| ||||||||||| |||| |||||||||||||||||||  |||||| ||||||    
T  9334590 attttcttttaatatttgaatctacttttatctatttgttatatatattatttgtattgaa 9334530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 29693266 - 29693207
Alignment:
Q  368 attttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||| || |||||| ||||||    
T  29693266 attttgttttaatatttgaatttactctcatctattcgttatat-tgttatttgcattgaa 29693207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 3531032 - 3531001
Alignment:
Q  378 aatatttgaatttactcttatctatttgttat 409  Q
    ||||||||||||||||||||||||||||||||    
T  3531032 aatatttgaatttactcttatctatttgttat 3531001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 19396928 - 19396869
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||| |||||| |||||||||||||||| || || |||||||||||||    
T  19396928 ttttattttaatatttaaatttattcttatctatttgttacatgtgttatttgaattgaa 19396869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 26710378 - 26710429
Alignment:
Q  379 atatttgaatttactcttatctatttgttatatatgatatttgaattgaatg 430  Q
    ||||||||||||| ||||||||||||||||||| || |||||  ||||||||    
T  26710378 atatttgaatttattcttatctatttgttatatgtgttatttatattgaatg 26710429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 27724956 - 27725007
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||||| ||||||| |||||| |||||||||||||||| ||||| ||||||    
T  27724956 tttgttttaatatttaaatttattcttatctatttgttacatatgttatttg 27725007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 30908494 - 30908435
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||| |||||||||| |||||| || |||||| ||||||    
T  30908494 ttttattttaatatttgaatttacttttatctatttattatatgtgttatttgtattgaa 30908435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 48109528 - 48109469
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| |||||||||||||||||| | |||||||||| ||| ||||| |||||| ||||||    
T  48109528 ttttatttgaatatttgaatttatttttatctattttttaaatatgttatttgtattgaa 48109469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 7468696 - 7468646
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| |||||||||||||||| ||||| |||||| ||||||    
T  7468696 aatatttaaatttattcttatctatttgttacatatgttatttgtattgaa 7468646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 9412496 - 9412446
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| ||||||||||||||||||| || |||||| ||||||    
T  9412496 aatatttaaatttattcttatctatttgttatatgtgttatttgtattgaa 9412446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 25834403 - 25834353
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| |||||||||||||||| ||||| |||||| ||||||    
T  25834403 aatatttaaatttattcttatctatttgttacatatgttatttgtattgaa 25834353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 27250602 - 27250552
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| ||||||||||||||||||| || |||||| ||||||    
T  27250602 aatatttaaatttattcttatctatttgttatatgtgttatttgtattgaa 27250552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 27723083 - 27723133
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| |||||||||||||||| ||||| |||||| ||||||    
T  27723083 aatatttaaatttattcttatctatttgttacatatgttatttgtattgaa 27723133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 4996159 - 4996126
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatat 411  Q
    ||||||| ||||||||||||||||||||||||||    
T  4996159 aatatttaaatttactcttatctatttgttatat 4996126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 15994432 - 15994465
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatat 411  Q
    |||||||||||||||| |||||||||||||||||    
T  15994432 aatatttgaatttacttttatctatttgttatat 15994465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 40417414 - 40417373
Alignment:
Q  368 attttgtttgaatatttgaatttactcttatctatttgttat 409  Q
    ||||| ||| |||||||| |||||||||||||||||||||||    
T  40417414 attttattttaatatttgcatttactcttatctatttgttat 40417373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Original strand, 12328376 - 12328404
Alignment:
Q  379 atatttgaatttactcttatctatttgtt 407  Q
    |||||||||||||||||||||||||||||    
T  12328376 atatttgaatttactcttatctatttgtt 12328404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 294 - 428
Target Start/End: Original strand, 31555615 - 31555747
Alignment:
Q  294 aatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttact 393  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||  ||  |||  | |||||||||||| |||||||||||||||     
T  31555615 aatatttgaattcactctcatccattatcttttttaaatgataaggaaaaaatcggac--attcaatttgttacattttgttttaatatttgaatttaca 31555712  T
Q  394 cttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||| ||||||||||||||| |||||| ||||||    
T  31555713 cttatttatttgttatatatgttatttgtattgaa 31555747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 17640957 - 17641019
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattga 427  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| | ||| |||||| |||||    
T  17640957 tacattttgttttaatatttgaatttactcttgtctatttgttacaaatgttatttgtattga 17641019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 17874497 - 17874429
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatata 356  Q
    ||||||||||||| |||| ||| || ||||||||||||| |||||||||| |||||| || ||||||||    
T  17874497 tttttcaatatttgaatttactttcttccattatcttttctaaatgataaggaaaaaatcggacatata 17874429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 42444458 - 42444398
Alignment:
Q  368 attttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||| ||| ||||||| ||||||||||||| |||||||||||| || |||||| ||||||    
T  42444458 attttattttaatatttaaatttactcttatttatttgttatatgtgctatttgtattgaa 42444398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 5880038 - 5879976
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||| ||| ||||||| |||||| |||||||||||||||| ||||| |||||| ||||||    
T  5880038 tacatttttttt-aatatttaaatttattcttatctatttgttacatatgttatttgtattgaa 5879976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 413
Target Start/End: Complemental strand, 19133208 - 19133173
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatat 413  Q
    |||||||||||||| |||||||||||||||||||||    
T  19133208 aatatttgaatttattcttatctatttgttatatat 19133173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 27912952 - 27912913
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgtta 408  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  27912952 ttttattttaatatttgaatttactcttatctatttgtta 27912913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 37867518 - 37867467
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    ||||||||  |||||||||||||||||||| |||||||||||| || |||||    
T  37867518 ttttgttttgatatttgaatttactcttatttatttgttatatgtgttattt 37867467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 39809261 - 39809312
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    |||| ||| |||||||||||||||||||||||||||| ||||| || |||||    
T  39809261 tttttttttaatatttgaatttactcttatctatttgatatatgtgctattt 39809312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 40301797 - 40301848
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    |||| ||| ||||||||||||||||||||||||||||| |||| || |||||    
T  40301797 ttttattttaatatttgaatttactcttatctatttgtcatatgtgctattt 40301848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 42651772 - 42651709
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||| ||| ||||||| |||||| |||||| || |||||| ||||| |||||||||||||    
T  42651772 tacattttttttaaatatttaaatttattcttatttacttgttacatatgttatttgaattgaa 42651709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 15249024 - 15248974
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| ||||||||||||||||||| || |||||| ||||||    
T  15249024 aatatttaaatttattcttatctatttgttatatgtgttatttgtattgaa 15248974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 16039223 - 16039173
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||||||| |||||||||| ||||||||||| || |||||| ||||||    
T  16039223 aatatttgaatctactcttatcaatttgttatatgtgttatttgtattgaa 16039173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 17873123 - 17873069
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaa 342  Q
    ||||| |||||||||||||||| || ||||||||||||| |||| ||||| ||||    
T  17873123 ttttttaatatttaaattcactttcttccattatcttttctaaaagataaagaaa 17873069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 29462661 - 29462611
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||| |||||||||||| ||| ||||| |||||||||||||    
T  29462661 aatatttaaatttattcttatctatttcttacatatgttatttgaattgaa 29462611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 33134906 - 33134963
Alignment:
Q  371 ttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||| ||||||| |||||| ||||||| ||||||||||| || |||||| ||||||    
T  33134906 ttgttttaatatttaaatttattcttatccatttgttatatgtgttatttgtattgaa 33134963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 740906 - 740950
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttat 409  Q
    |||| ||| ||| ||||||||||||||||||||||||| ||||||    
T  740906 tacaatttttttaaatatttgaatttactcttatctatgtgttat 740950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 3171647 - 3171679
Alignment:
Q  379 atatttgaatttactcttatctatttgttatat 411  Q
    |||||||||||||||||||| ||||||||||||    
T  3171647 atatttgaatttactcttatttatttgttatat 3171679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 9243846 - 9243914
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaatgatgatga 437  Q
    |||| ||| |||||||||||||| | ||||||||||||||||| |  |||||| |||||| | ||||||    
T  9243846 ttttattttaatatttgaatttatttttatctatttgttatatgtattatttgtattgaaagttgatga 9243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 258
Target Start/End: Original strand, 17640816 - 17640844
Alignment:
Q  230 atgtttgttacacgatatattttgtgtgg 258  Q
    |||||||||||||||||||||||||||||    
T  17640816 atgtttgttacacgatatattttgtgtgg 17640844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 21566032 - 21566084
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| |||||||||||||||| |||| |||||||||||| || ||||||    
T  21566032 ttttattttaatatttgaatttactattatttatttgttatatgtgttatttg 21566084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 25915377 - 25915429
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| |||||||||||||| |||||||||||| |||||| || ||||||    
T  25915377 ttttattttaatatttgaatttattcttatctatttattatatgtgttatttg 25915429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 411
Target Start/End: Original strand, 30841202 - 30841337
Alignment:
Q  273 ttgtgttcgttacactttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacatttt 372  Q
    ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||  ||||| ||||||||||| |||  | ||||||||    
T  30841202 ttgtgtttgttacacttttt-aatatttgaattcactgtcatccattatcttttttaaatggtaa-aaaaaaatcagacatatacaatttgttacatttt 30841299  T
Q  373 gtttgaatatttgaatttactcttatctatttgttatat 411  Q
    |||| ||||||| |||||||||||| |||||||||||||    
T  30841300 gttttaatatttaaatttactctta-ctatttgttatat 30841337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 428
Target Start/End: Original strand, 35583297 - 35583444
Alignment:
Q  281 gttacactttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaat 380  Q
    |||||||||||| ||||||| |||||| |||||||||||||||||||||||| |||| ||||||    |||||| | |    | |||||||||||  |||    
T  35583297 gttacacttttttaatatttgaattcattctcatccattatcttttttaaataataaggaaaaaaatggacataaacagcttgttacattttgttataat 35583396  T
Q  381 atttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||||||| |||||||| |||||||||| || |||||| ||||||    
T  35583397 atttgaatttaatcttatctttttgttatatgtgttatttgtattgaa 35583444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 25536600 - 25536539
Alignment:
Q  276 tgttcgttacactttttcaatatttaaattcactctcatccattatcttttttaaatgataa 337  Q
    |||| |||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  25536600 tgtttgttacatttttttaatatttgaattcactctcatctattatcttttttaaatgataa 25536539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 411
Target Start/End: Original strand, 26620979 - 26621104
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatg-aaaaattcagacatataaaataggatacattttgtttgaa-tatttg 385  Q
    ||||| ||||||| ||||| |||| ||||||||||||||||||||||||| | ||||| ||||||||||| |||    |||||||||||| || | |||     
T  26620979 ttttttaatatttgaattctctcttatccattatcttttttaaatgataaggaaaaaaatcagacatatacaattttttacattttgttttaattttttt 26621078  T
Q  386 aatttactcttatctatttgttatat 411  Q
     ||||||| |||| ||||||||||||    
T  26621079 tatttactgttatatatttgttatat 26621104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 19288990 - 19289048
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||| |||||| ||||||    
T  19288990 tttgttttaatatttaaatttattcttatctatttgttatatatgttatttgtattgaa 19289048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 16312859 - 16312817
Alignment:
Q  379 atatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  16312859 atatttgaatttacttttatctatttgttatatatgttatttg 16312817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 28400241 - 28400189
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| |||||||||||||||| |||||||| ||||||||||| ||||||    
T  28400241 tttttttttaatatttgaatttacttttatctatatgttatatatgttatttg 28400189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 38098946 - 38099038
Alignment:
Q  313 atccattatcttttttaaatgataatg-aaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctattt 404  Q
    ||||||||||||||||||| ||||| | ||||| |  || |||||  ||  | |||||||| ||| |||||||||||||||||||||||||||    
T  38098946 atccattatcttttttaaacgataagggaaaaaattggatatatatgattcgttacattttattttaatatttgaatttactcttatctattt 38099038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 1612169 - 1612228
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||| |||| |||||||||||||| || |||||| ||||||    
T  1612169 ttttattttaatatttgaatttaatcttgtctatttgttatatgtgttatttgtattgaa 1612228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 8839724 - 8839665
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||| ||||||||||||||||||||||| || || |||||| ||||||    
T  8839724 ttttattttaatatttaaatttactcttatctatttgttacatgtgttatttgtattgaa 8839665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 25536511 - 25536460
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    |||||||| |||||||||||||| |||||| |||||||||||| || |||||    
T  25536511 ttttgttttaatatttgaatttattcttatttatttgttatatgtgttattt 25536460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 1093696 - 1093642
Alignment:
Q  367 cattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||||| ||| ||||||| ||||||||| |||||||||||||||| || ||||||    
T  1093696 cattttattttaatatttaaatttactcatatctatttgttatatgtgttatttg 1093642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 7464281 - 7464339
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| |||||| |||||||||||||||| || || |||||| ||||||    
T  7464281 tttgttttaatatttaaatttattcttatctatttgttacatgtgttatttgtattgaa 7464339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 25536666 - 25536617
Alignment:
Q  212 tggacatatattcatatcatgtttgttacacgatatattttgtgtggaaac 262  Q
    |||||||||| ||||||  |||||||||||||||||| |||||||||||||    
T  25536666 tggacatatactcatatagtgtttgttacacgatata-tttgtgtggaaac 25536617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 27175046 - 27174996
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| |||||||| ||||||||||||||||| || |||||| ||||||    
T  27175046 aatatttaaatttacttttatctatttgttatatgtgctatttgtattgaa 27174996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 15341520 - 15341479
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttata 410  Q
    |||| ||| ||||||||||||||||||||| |||||||||||    
T  15341520 tttttttttaatatttgaatttactcttatttatttgttata 15341479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 35583236 - 35583269
Alignment:
Q  223 tcatatcatgtttgttacacgatatattttgtgt 256  Q
    ||||||| ||||||||||||||||||||||||||    
T  35583236 tcatatcgtgtttgttacacgatatattttgtgt 35583269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 10542887 - 10542847
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatat 418  Q
    |||||||||||||||| |||||||||||||| || ||||||    
T  10542887 aatatttgaatttactattatctatttgttacatgtgatat 10542847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 436
Target Start/End: Complemental strand, 9187530 - 9187383
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaa 387  Q
    ||||| ||||||| |||| || ||||| ||||||||||||||||||||||| |||||| | |||||||| | |  | |||||||| ||| ||||||||||    
T  9187530 ttttttaatatttgaatttacactcattcattatcttttttaaatgataataaaaaat-cggacatatacagtttgttacattttattttaatatttgaa 9187432  T
Q  388 tttactcttatctatttgttatatatgatatttgaattgaatgatgatg 436  Q
    |||||  |||||||||||||||||||| |||||| |||||||| |||||    
T  9187431 tttacctttatctatttgttatatatgttatttgtattgaatgttgatg 9187383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 9788708 - 9788558
Alignment:
Q  273 ttgtgttcgttacactttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacatttt 372  Q
    ||||||| |||| | ||||| ||||||||||||||||||     ||||||||||||||||||||| |||||| |||| |||||| |||  | ||||||||    
T  9788708 ttgtgtttgttataattttttaatatttaaattcactct-----attatcttttttaaatgataaagaaaaaatcaggcatatacaatttgttacatttt 9788614  T
Q  373 gtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| | |||||||||||||| ||||||||||||||||| |  |||||| ||||||    
T  9788613 gttttattatttgaatttactattatctatttgttatatttcctatttgcattgaa 9788558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 411
Target Start/End: Original strand, 24411925 - 24412048
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaa 387  Q
    ||||| ||||||| |||| ||| | |||||||||||||||||||||||||  ||||| ||  || |||| |||    |||||||||||| ||||||||||    
T  24411925 ttttttaatatttgaattaactttgatccattatcttttttaaatgataagaaaaaaatcgaacttatacaatttattacattttgttttaatatttgaa 24412024  T
Q  388 tttactcttatctatttgttatat 411  Q
    ||||| ||||||||||||||||||    
T  24412025 tttacccttatctatttgttatat 24412048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 32345154 - 32345285
Alignment:
Q  211 ttggacatatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacactttt-tcaatatttaaattcact 309  Q
    ||||||||||| ||||||| | ||||||||||||||||||||  |||| |||          ||||||| ||||||||||| | ||||||| ||||||||    
T  32345154 ttggacatatactcatatcttatttgttacacgatatatttttcgtggtaacaaaaaaa---ttgtgtttgttacacttttgttaatatttgaattcact 32345250  T
Q  310 ctcatccattatcttttttaaatgataatgaaaaa 344  Q
    |||||||||||||||||||||||||||| ||||||    
T  32345251 ctcatccattatcttttttaaatgataaggaaaaa 32345285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 32361762 - 32361893
Alignment:
Q  211 ttggacatatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacactttt-tcaatatttaaattcact 309  Q
    ||||||||||| ||||||| | ||||||||||||||||||||  |||| |||          ||||||| ||||||||||| | ||||||| ||||||||    
T  32361762 ttggacatatactcatatcttatttgttacacgatatatttttcgtggtaacaaaaaaa---ttgtgtttgttacacttttgttaatatttgaattcact 32361858  T
Q  310 ctcatccattatcttttttaaatgataatgaaaaa 344  Q
    |||||||||||||||||||||||||||| ||||||    
T  32361859 ctcatccattatcttttttaaatgataaggaaaaa 32361893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 11929810 - 11929869
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  11929810 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaa 11929869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 11941483 - 11941424
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  11941483 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaa 11941424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 15044473 - 15044532
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||| ||||||||||||||||||| || |||||| ||||||    
T  15044473 ttttattttaatatttgaatttaatcttatctatttgttatatgtgttatttgtattgaa 15044532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 428
Target Start/End: Original strand, 31267895 - 31268097
Alignment:
Q  222 ttcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttacact-ttttcaatatttaaattcactctcatccatta 320  Q
    |||||||| |||||||||||||||||||||| ||||| |||          ||||||| |||||||| |||| ||||||| |||| ||||| ||| ||||    
T  31267895 ttcatatcttgtttgttacacgatatattttttgtggtaacaaaaaaataattgtgtttgttacactatttttaatatttgaattaactctaatctatta 31267994  T
Q  321 tcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    ||||||  |||||||||  |||| || | |  |||| |||    |||||||||||| |||||||||||||||| | || ||||| ||||||||| || ||    
T  31267995 tctttt--aaatgataa--aaaagttga-atttatacaatttattacattttgttttaatatttgaatttactttaatttatttcttatatatgctactt 31268089  T
Q  421 gaattgaa 428  Q
    | ||||||    
T  31268090 gtattgaa 31268097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 37370117 - 37370069
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgata 336  Q
    ||||| ||| ||| ||||| |||||||||||||||||||||||||||||    
T  37370117 ttttttaatttttgaattctctctcatccattatcttttttaaatgata 37370069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 4535844 - 4535793
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    |||| ||| ||||||||||||||||||||||||||| |||||| || |||||    
T  4535844 ttttattttaatatttgaatttactcttatctatttattatatgtgttattt 4535793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 13369336 - 13369395
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||||||| ||||||||||||||| |||||| || |||||| ||||||    
T  13369336 ttttattttaatatttgaatgtactcttatctatttattatatgtgttatttgtattgaa 13369395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 42862523 - 42862472
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    |||| ||| ||||||||||||||||||||| |||||||||||| || |||||    
T  42862523 ttttattttaatatttgaatttactcttatttatttgttatatgtgttattt 42862472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 1759738 - 1759796
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| |||||| ||||||||||||||||||| |  |||||| ||||||    
T  1759738 tttgttttaatatttaaatttattcttatctatttgttatatttattatttgtattgaa 1759796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 16822922 - 16822980
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| |||||| |||||||||||||||| || || |||||| ||||||    
T  16822922 tttgttttaatatttaaatttattcttatctatttgttacatgtgttatttgtattgaa 16822980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 28969827 - 28969885
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| || ||| ||||||||||||||||||| || |||||| ||||||    
T  28969827 tttgttttaatatttaaacttattcttatctatttgttatatgtgttatttgtattgaa 28969885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 9187609 - 9187569
Alignment:
Q  212 tggacatatattcatatcatgtttgttacacgatatatttt 252  Q
    |||||||||| ||||||| |||||||||||| |||||||||    
T  9187609 tggacatatactcatatcgtgtttgttacacaatatatttt 9187569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 13575748 - 13575788
Alignment:
Q  381 atttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||||||||||||||||| || |||||||||||| ||||||    
T  13575748 atttgaatttactcttatatacttgttatatatgttatttg 13575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 16243605 - 16243549
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| ||| ||||||||||||||||||||||||||| ||| || || ||||||    
T  16243605 tacactttattttaatatttgaatttactcttatctattttttacatgtgttatttg 16243549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 23085828 - 23085788
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttat 409  Q
    |||| ||| |||||||||||| |||||||||||||||||||    
T  23085828 ttttattttaatatttgaattgactcttatctatttgttat 23085788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 427
Target Start/End: Original strand, 2344 - 2484
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatg-aaaaattcagacatataaaataggatacattttgtttgaatatttga 386  Q
    ||||| ||||||| |||||||| ||||| ||||||||||||||||||||| | ||||| || |||||||  |||  | |||||||||||| ||||||||     
T  2344 ttttttaatatttgaattcactttcatctattatcttttttaaatgataaggaaaaaaatcggacatatgcaatttgttacattttgttttaatatttgt 2443  T
Q  387 atttactcttatctatttgttatatatgatatttgaattga 427  Q
    ||||| | ||||||||||||||||| || |||||| |||||    
T  2444 atttatttttatctatttgttatatgtgttatttgtattga 2484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 6637 - 6515
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatga-aaaattcagacatataaaataggatacattttgtttgaatatttga 386  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |  |||||||| | |  |  ||||||||||| |||||||||    
T  6637 ttttttaatatttgaattcactctcatgcattatcttttttaaatgataatgaaaaaaatttgacatatacatttcgtaacattttgttttaatatttga 6538  T
Q  387 atttactcttatctatttgttat 409  Q
    ||||||||||| | |||||||||    
T  6537 atttactcttacccatttgttat 6515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 411
Target Start/End: Original strand, 14912171 - 14912301
Alignment:
Q  281 gttacactttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaat 380  Q
    |||||| ||||| ||||||| |||||||||||||||||| |||||||  |||||||| ||||||  |||||||||| | |    || || |||||| |||    
T  14912171 gttacagttttttaatatttgaattcactctcatccattttctttttagaatgataaggaaaaaaacagacatatacagtttattatatcttgttttaat 14912270  T
Q  381 atttgaatttactcttatctatttgttatat 411  Q
    |||||||||||||||||||||||| ||||||    
T  14912271 atttgaatttactcttatctatttattatat 14912301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 13240894 - 13240953
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  13240894 ttttattttaatatttgaatttactcttatctatttgttatatatgttatttgtattgaa 13240953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 428
Target Start/End: Original strand, 4965643 - 4965784
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatctttttt-aaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttga 386  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||     ||||||| |||    |||||| | ||| ||||||| |    
T  4965643 ttttttaatatttaaattcactcacatccattatcttttttaaaatgataaggaaaaaactgaacatatacaatttattacattctattttaatatttaa 4965742  T
Q  387 atttactcttatctatttgttatatatgatatttgaattgaa 428  Q
     |||| | ||||||||||||||||| || |||||| ||||||    
T  4965743 gtttagttttatctatttgttatatgtgctatttgtattgaa 4965784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 23124314 - 23124255
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  23124314 ttttatttcaatatttgaatttactcttatctatttgttatatgtgctatttgtattgaa 23124255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 411
Target Start/End: Original strand, 19707486 - 19707612
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttga----atatt 383  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||||| || |||||  || |||||||| |||  | || ||||||||| |    |||||    
T  19707486 ttttttaatattcaaattcactctcatctattatcttttttaaatgaaaaggaaaacatc-gacatatataatttgttatattttgttttaatatatatt 19707584  T
Q  384 tgaatttactcttatctatttgttatat 411  Q
    |||  |||||||||||||||||| ||||    
T  19707585 tgatattactcttatctatttgtcatat 19707612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 26306456 - 26306499
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  26306456 aatatttgaatttactcttatctatttgttatatttgttatttg 26306499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 2441314 - 2441258
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattg 426  Q
    ||||||| ||||||| |||||| | |||||||||||||||||||| |||||| ||||    
T  2441314 tttgttttaatatttaaatttattattatctatttgttatatatgttatttgtattg 2441258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 4965556 - 4965599
Alignment:
Q  215 acatatattcatatcatgtttgttacacgatatattttgtgtgg 258  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||    
T  4965556 acatatactcatatcgtgtttgttacccgatatattttgtgtgg 4965599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 9894596 - 9894655
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||| |||||||||| |||||| ||||| ||| ||||||    
T  9894596 ttttattttaatatttgaatttacttttatctatttcttatatgtgatagttgtattgaa 9894655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 14426489 - 14426430
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||| ||||||||||||||||||||||||| || || |||||| ||||||    
T  14426489 ttttattttaatatatgaatttactcttatctatttgttacatgtgttatttgtattgaa 14426430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 17942352 - 17942293
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||| |||||||||||||| |||||| || |||||| ||||||    
T  17942352 ttttattttaatatttgaattcactcttatctatttattatatttgttatttgtattgaa 17942293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 14912079 - 14912115
Alignment:
Q  215 acatatattcatatcatgtttgttacacgatatattt 251  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  14912079 acatatactcatatcgtgtttgttacacgatatattt 14912115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 17829672 - 17829620
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| |||||||||||||| | ||||||||||||||||| || ||||||    
T  17829672 ttttattttaatatttgaatttatttttatctatttgttatatgtgttatttg 17829620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 30591148 - 30591104
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttga 422  Q
    |||||||||||||||| |||| |||||||||||| || |||||||    
T  30591148 aatatttgaatttacttttatttatttgttatatgtgttatttga 30591104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 14770949 - 14771015
Alignment:
Q  364 atacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaatg 430  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  14770949 atacattttgttttaatatttgaatttactcttatctatttgttatatatgttatttgcattgaatg 14771015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 21967319 - 21967207
Alignment:
Q  309 tctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgtta 408  Q
    |||||||||||||||||||||||||||| |||||||       | || |||||  ||||||||||||| | |||||||||||||| ||||||||||||||    
T  21967319 tctcatccattatcttttttaaatgata-tgaaaaa-------aaatcaaatat-atacattttgttttattatttgaatttacttttatctatttgtta 21967229  T
Q  409 tatatgatatttgaattgaatg 430  Q
    ||| || |||||| ||||||||    
T  21967228 tatgtgttatttgtattgaatg 21967207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 21989755 - 21989643
Alignment:
Q  309 tctcatccattatcttttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgtta 408  Q
    |||||||||||||||||||||||||||| |||||||       | || |||||  ||||||||||||| | |||||||||||||| ||||||||||||||    
T  21989755 tctcatccattatcttttttaaatgata-tgaaaaa-------aaatcaaatat-atacattttgttttattatttgaatttacttttatctatttgtta 21989665  T
Q  409 tatatgatatttgaattgaatg 430  Q
    ||| || |||||| ||||||||    
T  21989664 tatgtgttatttgtattgaatg 21989643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 21082747 - 21082630
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaatgataatgaaaaat---tcagacatataaaataggatacattttgtttgaatattt 384  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||| |||| |||||||   ||||| || || |||  | |||||||||||| |||||||    
T  21082747 tttttaaatatttgaattcact-tcatccattatcttttttaaataataaggaaaaataaatcagatatgtacaatttgttacattttgttttaatattt 21082649  T
Q  385 gaatttactcttatctatt 403  Q
    |||||| ||| | ||||||    
T  21082648 gaattttctcatgtctatt 21082630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 23267905 - 23267846
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  23267905 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaa 23267846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 428
Target Start/End: Original strand, 13475398 - 13475617
Alignment:
Q  212 tggacatatattcatatcatgtttgttacacgatatattttgtgtggaaacnnnnnnnnnnttgtgttcgttaca--ctttttcaatatttaaattcact 309  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||  |||          || |||| ||||||   ||||| ||||||| |||| |||    
T  13475398 tggacatatattcataccgtgtttgttacacgatataatttgtgtgataacaaaagtaatattatgtttgttacatttttttttaatatttgaatttact 13475497  T
Q  310 ctcatccattatcttttttaaatgataatgaaaaat---tcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgt 406  Q
    ||||| |||||||||||||||||||| ||||| |||   |  |||||||| |||    |||||||| ||| ||||||| ||||||||||||| | |||||    
T  13475498 ctcattcattatcttttttaaatgat-atgaataatatgtttgacatatacaattttttacattttattttaatatttaaatttactcttat-tttttgt 13475595  T
Q  407 tatatatgatatttgaattgaa 428  Q
    ||||| |  |||||| ||||||    
T  13475596 tatatgtactatttgcattgaa 13475617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 21495459 - 21495407
Alignment:
Q  368 attttgtttgaatatttgaatttactcttatctatttgttatatatgatattt 420  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||    
T  21495459 attttgttttaatatttaaatttactcttatctatttgttacatatgttattt 21495407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 49758590 - 49758642
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || ||||||    
T  49758590 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttg 49758642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 19468231 - 19468290
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| |||||||||||||||||||||||| ||||||||| || |||||| ||||||    
T  19468231 ttttattttaatatttgaatttactcttatctaattgttatatgtgctatttgtattgaa 19468290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 49430030 - 49429976
Alignment:
Q  384 tgaatttactcttatctatttgttatatatgatatttgaattgaatgatgatgat 438  Q
    ||||||||||||||| |||||||||||||||||||||| | |||| | |||||||    
T  49430030 tgaatttactcttatgtatttgttatatatgatatttgtagtgaaagttgatgat 49429976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 14770866 - 14770914
Alignment:
Q  273 ttgtgttcgttacactttttcaatatttaaattcactctcatccattat 321  Q
    ||||||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  14770866 ttgtgtttgttacacttttttaatatttgaattcgctctcatccattat 14770914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Complemental strand, 17590040 - 17589982
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| |||||| |||||||||||| ||| ||||| |||||| ||||||    
T  17590040 tttgttttaatatttaaatttattcttatctatttattacatatgttatttgtattgaa 17589982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 18875278 - 18875336
Alignment:
Q  370 tttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    ||||||| ||||||| |||||| |||||||||||||||| || || |||||| ||||||    
T  18875278 tttgttttaatatttaaatttattcttatctatttgttacatgtgttatttgtattgaa 18875336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 45879663 - 45879613
Alignment:
Q  378 aatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||||||||||||||||| || ||||||||||||||  |||||| ||||||    
T  45879663 aatatttgaatttactctaatatatttgttatatatactatttgtattgaa 45879613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 20838084 - 20838039
Alignment:
Q  364 atacattttgtttgaatatttgaatttactcttatctatttgttat 409  Q
    |||| |||| ||| ||||||||||| ||||||||||||||||||||    
T  20838084 atactttttttttaaatatttgaatctactcttatctatttgttat 20838039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 7791453 - 7791505
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttg 421  Q
    |||| ||| ||||||| ||||||||||||| ||||||| |||| |||||||||    
T  7791453 ttttattttaatatttcaatttactcttatatatttgtcatatgtgatatttg 7791505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 30806075 - 30806119
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatat 413  Q
    |||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  30806075 ttttattttaatattttaatttactcttatttatttgttatatat 30806119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 427
Target Start/End: Complemental strand, 101441 - 101338
Alignment:
Q  324 tttttaaatgataatgaaaaattcagacatataaaataggatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaa 423  Q
    |||||| ||||||| |||||| ||| ||||||| |||  | |||||||| |||  ||||||||||||||| ||||||||||||||||| || |||||| |    
T  101441 tttttagatgataaggaaaaaatcaaacatatataatttgttacattttatttagatatttgaatttactattatctatttgttatatgtgttatttgta 101342  T
Q  424 ttga 427  Q
    ||||    
T  101341 ttga 101338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 101522 - 101474
Alignment:
Q  273 ttgtgttcgttacactttttcaatatttaaattcactctcatccattat 321  Q
    |||||||  ||||||||||| ||||||| |||||||||||||| |||||    
T  101522 ttgtgtttattacacttttttaatatttgaattcactctcatcaattat 101474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 32809 - 32868
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||||||||||||||||||||||| |||||| || |||||| ||||||    
T  32809 ttttattttaatatttgaatttactcttatctatttattatatgtgttatttgtattgaa 32868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 72759 - 72715
Alignment:
Q  288 tttttcaatatttaaattcactctcatccattatcttttttaaat 332  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||    
T  72759 ttttttaatatttgaattcactctcatccattatctttttcaaat 72715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Original strand, 4200 - 4263
Alignment:
Q  365 tacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||| ||||||| |||||| ||||||||||||||||||| || |||||| ||||||    
T  4200 tacactttattttaatatttaaatttattcttatctatttgttatatgtgttatttgtattgaa 4263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 43308 - 43367
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttatatatgatatttgaattgaa 428  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||  | |||||| ||||||    
T  43308 ttttattttaatatttgaatttactcttatttatttgttatatgcgttatttgcattgaa 43367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 57295 - 57335
Alignment:
Q  369 ttttgtttgaatatttgaatttactcttatctatttgttat 409  Q
    |||||||| |||||||||||||| | |||||||||||||||    
T  57295 ttttgtttaaatatttgaatttattattatctatttgttat 57335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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