View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_18 (Length: 445)
Name: NF5478_high_18
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 32708073 - 32708498
Alignment:
| Q |
1 |
agctatttgaattctcaaaaaccaaatcatacaaatgtagataattatactttctttgaaagaaaagaaaatccaaaaagcttcactttcactgttttgg |
100 |
Q |
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| T |
32708073 |
agctatttgaattctcaaaaaccaaatcatacaaatgtagataattatactttctttgaaagaaaataaaatccaaaaagcttcactttcactgttttgg |
32708172 |
T |
|
| Q |
101 |
ataatgtaatgcttatgttgaagctaagattattttcacaattcaatattcacttataaaacagttataacataaccaagcaaaatcctcatgaattatg |
200 |
Q |
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| T |
32708173 |
ataatgtaatgcttatgttgaagctaagattattttcacaattcaatattgacttataaaacagttataacataaccaagcaaaatcctcatgaattatg |
32708272 |
T |
|
| Q |
201 |
aacaattgaagcagaat--nnnnnnnnnnnnnnnngtggtgaattagttagtagtaattaccctattgaagaccatgaaaccaaggtccaaatcaacacc |
298 |
Q |
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| T |
32708273 |
aacaattgaagcagaataaaaaagtaaaaaaaaaagtggtgaa----ttagtagtaattaccctattgaagaccatgaaaccaaggtccaaatcaacacc |
32708368 |
T |
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| Q |
299 |
atcagcattaacagtttttgcatgtccacccaagtaatcttctttctcatacagaaccacattgactccacctttggccaaaacataagctgaaaccaaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708369 |
atcagcattaacagtttttgcatgtccacccaagtaatcttctttctcatacagaaccacattgactccacctttggccaaaacataagctgaaaccaaa |
32708468 |
T |
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| Q |
399 |
ccactaatcccaccaccaaccactgcaact |
428 |
Q |
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| T |
32708469 |
ccactaatcccaccaccaaccactgcaact |
32708498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 16805052 - 16804966
Alignment:
| Q |
342 |
ttctcatacagaaccacattgactccacctttggccaaaacataagctgaaaccaaaccactaatcccaccaccaaccactgcaact |
428 |
Q |
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|||||||||| |||||||| || ||| |||| || |||||||| || |||||||| ||||||||||| ||||||||||||||||| |
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| T |
16805052 |
ttctcatacaacaccacattcacaccagcttttgctaaaacatatgcagaaaccaacccactaatccctgcaccaaccactgcaact |
16804966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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