View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_23 (Length: 415)

Name: NF5478_high_23
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_23
NF5478_high_23
[»] chr6 (25 HSPs)
chr6 (20-396)||(5890013-5890389)
chr6 (17-361)||(5820418-5820765)
chr6 (19-394)||(5882817-5883197)
chr6 (19-394)||(5880088-5880478)
chr6 (19-396)||(5755345-5755728)
chr6 (19-396)||(5760823-5761206)
chr6 (19-391)||(5829711-5830098)
chr6 (19-361)||(5852685-5853033)
chr6 (33-259)||(5826966-5827198)
chr6 (173-361)||(5763858-5764046)
chr6 (173-361)||(5767393-5767581)
chr6 (173-361)||(5770928-5771116)
chr6 (173-361)||(5774463-5774651)
chr6 (173-361)||(5777998-5778186)
chr6 (173-361)||(5781533-5781721)
chr6 (173-361)||(5785068-5785256)
chr6 (173-361)||(5788603-5788791)
chr6 (173-361)||(5792138-5792326)
chr6 (173-361)||(5795673-5795861)
chr6 (173-361)||(5799208-5799396)
chr6 (173-361)||(5802743-5802931)
chr6 (173-361)||(5806278-5806466)
chr6 (173-361)||(5809813-5810001)
chr6 (173-361)||(5813348-5813536)
chr6 (173-361)||(5816883-5817071)
[»] scaffold0087 (12 HSPs)
scaffold0087 (19-391)||(55034-55412)
scaffold0087 (19-393)||(19426-19806)
scaffold0087 (19-393)||(29774-30154)
scaffold0087 (56-360)||(39865-40175)
scaffold0087 (19-393)||(12392-12772)
scaffold0087 (19-391)||(33783-34170)
scaffold0087 (55-392)||(5390-5736)
scaffold0087 (55-392)||(22505-22851)
scaffold0087 (55-261)||(816-1030)
scaffold0087 (55-261)||(15705-15919)
scaffold0087 (308-357)||(731-780)
scaffold0087 (308-357)||(15620-15669)
[»] scaffold0019 (1 HSPs)
scaffold0019 (18-145)||(173026-173157)
[»] scaffold0127 (4 HSPs)
scaffold0127 (18-144)||(16423-16552)
scaffold0127 (324-394)||(16687-16755)
scaffold0127 (321-393)||(18072-18146)
scaffold0127 (207-268)||(16611-16673)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 5890013 - 5890389
Alignment:
Q  20 agacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaaa 119  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5890013 agacaaggatgtacaaaaagaagataaagactctgtaaacatattacttgagagaaatagagcgtacaactctggaaaaggaggcagtgaaccattcaaa 5890112  T
Q  120 ttgttgaaactaaaatcccacacattctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaacattcaagt 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||| | ||||||||||||||||||||    
T  5890113 ttgttgaaactaaaatcccacacattctcaaattttactttcatacttgtaaatgactttggcaaaggtccattaagttggttatgtgaaacattcaagt 5890212  T
Q  220 atcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgatgtttgag 319  Q
    || | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||  | ||||||||||||||    
T  5890213 attgtaaactcgaagagagattccaaaaccatttaggaaatgaatccgaaataccacaattagagatgtcgagaatcataagttccccttgatgtttgag 5890312  T
Q  320 ccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaatctg 396  Q
    ||||  |||||||||||||||||||||||| || |||||||| | ||||||||| ||||||||||||||||||||||    
T  5890313 ccatgatggaaatttaggacctaatgtgcatgaagatgcatatagtgtttctagtttgaaaggtgcaacccaatctg 5890389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 5820765 - 5820418
Alignment:
Q  17 cagagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattc 116  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||||||||    
T  5820765 cagagacgaggatgtacaaaaagaagataaggactctgtaaacatattacttgagagaaatagagcgtaaaactttggaaaaggaggcagtgaaccattc 5820666  T
Q  117 aaattgttgaaactaaaatcccacacattctca--tat-tttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaacat 213  Q
    |||||||||||||||||||||||||||||||||  |||  | | ||||||| ||  || |||||||||||||||||| ||||| ||||||| ||||||||    
T  5820665 aaattgttgaaactaaaatcccacacattctcaagtatactgaatttcatatttggaattgactttggcaagggtccattaagtttgttatatgaaacat 5820566  T
Q  214 tcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgatg 313  Q
    ||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||      |||  | || |||||    
T  5820565 tcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccactacttgagatgtctagcacacgaagttccccatgatg 5820466  T
Q  314 tttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
     |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5820465 cttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5820418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 5883197 - 5882817
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| ||||||||||||||  |||  ||||||||||||||||||||||||||||||   |   | |||||| |  |||| |||||| |||||    
T  5883197 gagatgaggatgtacaaaaagaagatatggaccatgtaaacatattatttgagagaaatagagctcgcggttttggaaatgacggcaatgaaccgttcaa 5883098  T
Q  119 attgttgaaactaaaatcccacacattctcatattt------tactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
     || |||||||||||||||||||||   ||||| ||      ||||||  |||||  |||||| |||||||||||||| ||||| |||||||||||||||    
T  5883097 gttattgaaactaaaatcccacacaaaatcataattattatttactttattacttggaaatgattttggcaagggtccattaagtttgttatgtgaaaca 5882998  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |  ||||  | ||   ||    
T  5882997 ttcaagtattccaaactcgaagagagattccaaaaccatttaggaactgaatctgaaataccactatttgagatgtctagagttgtaagttccccacaat 5882898  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaatc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||||| |||||||||    
T  5882897 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata-tatgtttcaagtttgaaaggtggaacccaatc 5882817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 5880478 - 5880088
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    ||||| |||| | ||| ||||||||||| ||| || ||| ||||||||||||||||||||||| || ||| | ||||||||| |||| ||||||||||||    
T  5880478 gagacaaggaagtacagaaagaagataaggaccctataagcatattatttgagagaaatagagaatgcaattttggaaaaggtggcaatgaaccattcaa 5880379  T
Q  119 attgttgaaactaaaatcccacacattctc---------------atattttactttcatacttataaatgactttggcaagggtcctttaagattgtta 203  Q
    ||| |||||||| ||||||||||||  ||                || ||||||||||| ||||  |||  | ||||||||| |||| | ||| ||||||    
T  5880378 attattgaaactgaaatcccacacaaccttttgactgaaaaaataatcttttactttcaaacttggaaagtattttggcaagtgtccatgaagtttgtta 5880279  T
Q  204 tgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggc 303  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||      
T  5880278 tgtgaaacattcaagtattgcaaacttgaagatagattccaaaaccatttaggaaatgaatctgaaataccactattggagatttccagattcacaagtt 5880179  T
Q  304 cgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaatc 394  Q
      |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  5880178 ttccttgatgtttgagccatgttggaaatttaggacccagtgtgcacgatgatgcatacaatgtttcaagtttgaaaggtggaacccaatc 5880088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 5755728 - 5755345
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| |||||||||||| |  | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  5755728 gagatgaggatgaacaaaaagaagacagggtccctgtaaacatattatttgagagaaatagagcgtacaactctggaaaaggaggcactgaaccattcaa 5755629  T
Q  119 attgttgaaactaaaatcccacac------attctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
    ||||||||||||||||||||||||      ||  ||||| ||||| |||| ||||   || || |||||||||||||| || || |||||||| |||| |    
T  5755628 attgttgaaactaaaatcccacacccgaatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaa 5755529  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    | |||||||  |||||| ||||| | ||||| |||||||||||||||||||||||||||||||| |||||| || |  ||||   |||| || | |||||    
T  5755528 tccaagtatttcaaacttgaagataaattcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttgat 5755429  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaatctg 396  Q
    ||||||||||| |||| ||||||||||| |  | ||| || |||||||  | | ||||||| ||||||||||||||||||||||    
T  5755428 gtttgagccatgttgggaatttaggacccagcgggcatgacgatgcatgtagtatttctagtttgaaaggtgcaacccaatctg 5755345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 5761206 - 5760823
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| |||||||||||| |  | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  5761206 gagatgaggatgaacaaaaagaagacagggtccctgtaaacatattatttgagagaaatagagcgtacaactctggaaaaggaggcactgaaccattcaa 5761107  T
Q  119 attgttgaaactaaaatcccacac------attctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
    ||||||||||||||||||||||||      ||  ||||| ||||| |||| ||||   || || |||||||||||||| || || |||||||| |||| |    
T  5761106 attgttgaaactaaaatcccacacccgaatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaa 5761007  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    | |||||||  |||||| ||||| | ||||| |||||||||||||||||||||||||||||||| |||||| || |  ||||   |||| || | |||||    
T  5761006 tccaagtatttcaaacttgaagataaattcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttgat 5760907  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaatctg 396  Q
    ||||||||||| |||| ||||||||||| |  | ||| || |||||||  | | ||||||| ||||||||||||||||||||||    
T  5760906 gtttgagccatgttgggaatttaggacccagcgggcatgacgatgcatgtagtatttctagtttgaaaggtgcaacccaatctg 5760823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 5830098 - 5829711
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| |||||||  ||||||||||||| |||| |||| |||||||| ||||||||||||| | ||  ||  |||||||||| ||||| |||||||||||     
T  5830098 gagatgaggatgtgcaaaaagaagatagagaccctgttaacatattctttgagagaaataaaacacccagttctggaaaagcaggcaatgaaccattcat 5829999  T
Q  119 attgttgaaactaaaatcccacacattc---------------tcatattttactttcatacttataaatgactttggcaagggtcctttaagattgtta 203  Q
    ||| ||||||||||||||||| |||| |               ||||| ||  ||||  | ||| ||||||| |||||||||| |||||||||  |||||    
T  5829998 attattgaaactaaaatcccatacatcccacccatgatcataatcataattaccttttgttcttgtaaatgattttggcaaggttcctttaagtatgtta 5829899  T
Q  204 tgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggc 303  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||  |||      
T  5829898 tgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaataccattatgagagatgtcaagaatctcaagtt 5829799  T
Q  304 cgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaaccca 391  Q
    | ||||||||||||||||||  ||||||||||||||||||||| || ||||||||||| | | ||||||| |||||||||| ||||||    
T  5829798 ccccttgatgtttgagccatgctggaaatttaggacctaatgtacaggatgatgcatatagtctttctagcttgaaaggtggaaccca 5829711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 5853033 - 5852685
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||  ||  |||||||||| ||||| ||||||||||||    
T  5853033 gagatgaggatgtacaaaaagaagacaaggaccctgtaaacatattatttgagagaaatagagcacccagttctggaaaagcaggcaatgaaccattcaa 5852934  T
Q  119 attgttgaaactaaaatcccacacattctc------atattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
    ||| ||||||||||||||||| |||| |        ||  |  |||||  |  || |||| || ||||||||   |||||||||  ||||||||||||||    
T  5852933 attattgaaactaaaatcccatacatacaacttacgatcataaacttttgtttttgtaaacgattttggcaacattcctttaagtatgttatgtgaaaca 5852834  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |  ||| || |||||||    
T  5852833 ttcaagtatcgcaaactcaaagatagcttccaaaaccatttaggaaatgaatctgaaatactactatgagagatgtcaagatactcaagtcccccttgat 5852734  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    || | ||||||| ||||||||||||||||||| | ||||||||||||||    
T  5852733 gtctaagccatactggaaatttaggacctaatatacacgatgatgcata 5852685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 33 - 259
Target Start/End: Complemental strand, 5827198 - 5826966
Alignment:
Q  33 caaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaaattgttgaaactaa 132  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||    ||| ||||||||||| |||| |||||||| ||||||||||||||| |    
T  5827198 caaaaggaagataaggaccctgtaaacatattatttgagagaaatagagagctcaattctggaaaaggtggcaatgaaccatccaaattgttgaaactga 5827099  T
Q  133 aatcccacac------attctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaa 226  Q
    ||||||||||      | |  ||| |||||||||||| |||  ||| || |||||||||||||| ||||  |||||||||||||||||||||||  ||||    
T  5827098 aatcccacacacgataagttgcatcttttactttcatgcttggaaaagattttggcaagggtccattaattttgttatgtgaaacattcaagtaatgcaa 5826999  T
Q  227 actcgaagagagattccaaaaccatttaggaaa 259  Q
    ||| ||||| |||||||||||||||||||||||    
T  5826998 acttgaagatagattccaaaaccatttaggaaa 5826966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5764046 - 5763858
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5764046 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5763947  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5763946 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5763858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5767581 - 5767393
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5767581 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5767482  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5767481 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5767393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5771116 - 5770928
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5771116 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5771017  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5771016 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5770928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5774651 - 5774463
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5774651 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5774552  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5774551 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5774463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5778186 - 5777998
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5778186 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5778087  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5778086 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5777998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5781721 - 5781533
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5781721 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5781622  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5781621 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5781533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5785256 - 5785068
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5785256 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5785157  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5785156 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5785068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5788791 - 5788603
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5788791 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5788692  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5788691 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5788603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5792326 - 5792138
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5792326 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5792227  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5792226 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5792138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5795861 - 5795673
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5795861 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5795762  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5795761 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5795673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5799396 - 5799208
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5799396 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5799297  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5799296 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5799208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5802931 - 5802743
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5802931 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5802832  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5802831 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5802743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5806466 - 5806278
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5806466 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5806367  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5806366 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5806278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5810001 - 5809813
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5810001 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5809902  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5809901 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5809813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5813536 - 5813348
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5813536 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5813437  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5813436 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5813348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 5817071 - 5816883
Alignment:
Q  173 tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaata 272  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5817071 tgactttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaata 5816972  T
Q  273 ccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcata 361  Q
    |||||| | |||||||| ||      |||  | || ||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  5816971 ccactacttgagatgtctagcacacgaagttccccatgatgcttgagccatactggaaattttggacccaatgtgcacgatgatgcata 5816883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 144; Significance: 1e-75; HSPs: 12)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 55412 - 55034
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| |||||||||||| |  | | ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||    
T  55412 gagatgaggatgaacaaaaagaagacagggtccctgtaaacatattatttgagagaaatagagcgtacaactttggaaatggaggcagtaaaccattcaa 55313  T
Q  119 attgttgaaactaaaatcccacac------attctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
    ||||||||||||||||||||||||      ||  ||||| ||||| |||| ||||   || || |||||||||||||| || || |||||||| ||||||    
T  55312 attgttgaaactaaaatcccacacccaaatatcttcataatttacattcagactttgtaaggattttggcaagggtccattgagtttgttatgggaaaca 55213  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    | |||||||| |||||||||||  | |||||| ||||||||||||||||||||||||||||||| ||||||||| |  | ||   |||| |  | |||||    
T  55212 tccaagtatctcaaactcgaaggtaaattccagaaccatttaggaaatgaatctgaaataccacaattagagatatttatatcagtaagccacctttgat 55113  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaaccca 391  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||  | | |||| || |||||||||| ||||||    
T  55112 gtttgagccataatggaaatttaggacccaatgtgcatgatgatgcatgtagtttttccagtttgaaaggtggaaccca 55034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 19806 - 19426
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| |||||| ||||| |  ||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||    
T  19806 gagatgaggatgtacaaaacgaagacagggaccctgtaaacatattatttgagagaaatagagcgtacaactttggaaatggaggcactgaaccattcaa 19707  T
Q  119 attgttgaaactaaaatcccacac------attctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
    ||||||||||||||||||||||||      ||  ||||| ||||| |||| ||||   || || |||||||||||||| || || || ||||| |||| |    
T  19706 attgttgaaactaaaatcccacacccaaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaata 19607  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    | |||||||  |||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |  ||||   |||  |||| |||||    
T  19606 tccaagtatgtcaaactcgaagataaattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaatcccgcgttgat 19507  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaat 393  Q
     ||||||||||  ||||||||||||||| |||||||| |||||||||   | |||||| || |||||||||| ||||||||    
T  19506 atttgagccatgctggaaatttaggacccaatgtgcatgatgatgcaagtagtgtttccagtttgaaaggtggaacccaat 19426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 30154 - 29774
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| |||||| ||||| |  ||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||    
T  30154 gagatgaggatgtacaaaacgaagacagggaccctgtaaacatattatttgagagaaatagagcgtacaactttggaaatggaggcactgaaccattcaa 30055  T
Q  119 attgttgaaactaaaatcccacac------attctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
    ||||||||||||||||||||||||      ||  ||||| ||||| |||| ||||   || || |||||||||||||| || || || ||||| |||| |    
T  30054 attgttgaaactaaaatcccacacccaaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaata 29955  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    | |||||||  |||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |  ||||   |||  |||| |||||    
T  29954 tccaagtatgtcaaactcgaagataaattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaatcccgcgttgat 29855  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaat 393  Q
     ||||||||||  ||||||||||||||| |||||||| |||||||||   | |||||| || |||||||||| ||||||||    
T  29854 atttgagccatgctggaaatttaggacccaatgtgcatgatgatgcaagtagtgtttccagtttgaaaggtggaacccaat 29774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 56 - 360
Target Start/End: Complemental strand, 40175 - 39865
Alignment:
Q  56 aaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaaattgttgaaactaaaatcccacaca------ttctca 149  Q
    ||||||||||||||||||||| || | |  ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||      |  |||    
T  40175 aaacatattatttgagagaaacagggaactcaattctggaaaaggaggcaatgaaccattcaaattgttgaaactaaaatcccacacaaaaaagtgatca 40076  T
Q  150 tattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactcgaagagagattccaaaacc 249  Q
    ||||||| ||||||||||  ||||||| ||||||||||||| ||||| |||||||  || || |||||||||  |||||| ||||| |||||||||||||    
T  40075 tattttaatttcatacttggaaatgacattggcaagggtccattaagtttgttatacgatacgttcaagtatgtcaaacttgaagatagattccaaaacc 39976  T
Q  250 atttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatgtgca 349  Q
    |||| |||||||||||| |||||||| |||||||||| || |||||| ||||  | || | |||||||||||||  ||||||||||||||| ||||||||    
T  39975 attttggaaatgaatctaaaataccaatattagagatttctagattcctaagttccccattatgtttgagccatcctggaaatttaggacccaatgtgca 39876  T
Q  350 cgatgatgcat 360  Q
    ||| |||||||    
T  39875 cgaagatgcat 39865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 12772 - 12392
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| ||||||| ||| |||||||| |  ||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||    
T  12772 gagatgaggatgtacacaaagaagacagggaccctgtaaacatattatttgagagaaatagagcgtccaactttggaaaaggaggcagtaaaccattcaa 12673  T
Q  119 attgttgaaactaaaatcccacac------attctcatattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaaca 212  Q
    ||||||||||||||||||||||||      ||  ||||| ||||| |||| ||||   || || |||||||||||||| || || |||||||| ||||||    
T  12672 attgttgaaactaaaatcccacacccgaaaatgatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaca 12573  T
Q  213 ttcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgat 312  Q
    |||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||| || |  ||||    ||| || | |||||    
T  12572 ttcaagtatctcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccacaattagaaatatttagatcagcaagccccctttgat 12473  T
Q  313 gtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaat 393  Q
    ||||||||||| |||| ||||||||||| |  | ||| || |||||||  | |||||| || ||||| |||| ||||||||    
T  12472 gtttgagccatgttgggaatttaggacccagcgggcatgacgatgcatgtagtgtttccagtttgaagggtggaacccaat 12392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 34170 - 33783
Alignment:
Q  19 gagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaaccattcaa 118  Q
    |||| |||||||  |||||||||||||  ||| |||| |||||||| ||||||||||||| | ||  ||  |||||||||| ||||| |||||||||||     
T  34170 gagatgaggatgtgcaaaaagaagatagtgaccctgttaacatattctttgagagaaataaaacacccagttctggaaaagcaggcaatgaaccattcat 34071  T
Q  119 attgttgaaactaaaatcccacacattc---------------tcatattttactttcatacttataaatgactttggcaagggtcctttaagattgtta 203  Q
    ||| ||||||||||||||||| |||| |               ||||| ||  ||||  | ||| ||||||| |||||||||| |||||||||  |||||    
T  34070 attattgaaactaaaatcccatacatcccacccatgatcataatcataattaccttttgttcttgtaaatgattttggcaaggttcctttaagtatgtta 33971  T
Q  204 tgtgaaacattcaagtatcgcaaactcgaagagagattccaaaaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggc 303  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||  |||      
T  33970 tgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaataccattatgagagatgtcaagaatctcaagtt 33871  T
Q  304 cgccttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaaccca 391  Q
    | ||||||||||||||||||  ||||||||||||||||||||| || ||||||||||| | | ||||||| |||||||||| ||||||    
T  33870 ccccttgatgtttgagccatgctggaaatttaggacctaatgtacaggatgatgcatatagtctttctagcttgaaaggtggaaccca 33783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 392
Target Start/End: Complemental strand, 5736 - 5390
Alignment:
Q  55 taaacatattatttgagagaaata-gagcatacaactctggaaaaggaggcagtgaaccattcaaattgttgaaactaaaatcccacacattctcatatt 153  Q
    |||||||||||||| ||||||||| ||| |  ||| | |||||||||||| | ||| | ||||||||||||||||||||||||||| || |  ||||| |    
T  5736 taaacatattattttagagaaataagagaacgcaattttggaaaaggaggaaatgatcaattcaaattgttgaaactaaaatcccaaacctgatcataat 5637  T
Q  154 ------ttactttcatacttataaa-tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactc-gaagagagattccaa 245  Q
          |||||||  |||||  ||| ||| || |||||||| || || || ||||||||||||||| ||||||||  ||||||  ||||| | |||||||    
T  5636 cataacttacttttgtacttggaaaatgatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaa 5537  T
Q  246 aaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatg 345  Q
    || ||||| || ||||||||| |||| ||  |||||||||| |  ||||  |||||  | | ||||||||| | ||||  ||||||||||||||| ||||    
T  5536 aatcatttggggaatgaatctaaaatgccgttattagagatatttagatcaataagttccctttgatgttttaaccatgctggaaatttaggacccaatg 5437  T
Q  346 tgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaa 392  Q
    |||| |||||||  || | |||||| || |||||||||| |||||||    
T  5436 tgcatgatgatgattatagtgtttcaagtttgaaaggtggaacccaa 5390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 392
Target Start/End: Complemental strand, 22851 - 22505
Alignment:
Q  55 taaacatattatttgagagaaata-gagcatacaactctggaaaaggaggcagtgaaccattcaaattgttgaaactaaaatcccacacattctcatatt 153  Q
    |||||||||||||| ||||||||| ||| |  ||| | |||||||||||| | ||| | ||||||||||||||||||||||||||| || |  ||||| |    
T  22851 taaacatattattttagagaaataagagaacgcaattttggaaaaggaggaaatgatctattcaaattgttgaaactaaaatcccaaacctgatcataat 22752  T
Q  154 ------ttactttcatacttataaa-tgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaactc-gaagagagattccaa 245  Q
          |||||||  |||||  ||| ||| || |||||||| || || || ||||||||||||||| ||||||||  ||||||  ||||| | |||||||    
T  22751 cataacttacttttgtacttggaaaatgatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaa 22652  T
Q  246 aaccatttaggaaatgaatctgaaataccactattagagatgtcgagattcataaggccgccttgatgtttgagccatattggaaatttaggacctaatg 345  Q
    || ||||| || ||||||||| |||| ||  |||||||||| |  ||||  |||||  | | ||||||||| | ||||  ||||||||||||||| ||||    
T  22651 aatcattttgggaatgaatctaaaatgccgttattagagatatttagatcaataagttccctttgatgttttaaccatgctggaaatttaggacccaatg 22552  T
Q  346 tgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaa 392  Q
    |||| |||||||  || | |||||| || |||||||||| |||||||    
T  22551 tgcatgatgatgattatagtgtttcaagtttgaaaggtggaacccaa 22505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 1030 - 816
Alignment:
Q  55 taaacatattatttgagagaaata-gagcatacaactctggaaaaggaggcagtgaaccattcaaattgttgaaactaaaatcccaca------cattct 147  Q
    |||||||||||||||||||||||| ||| |  ||| | |||||||||||| | ||| ||||| |||||||||||||||||||||||||      |||  |    
T  1030 taaacatattatttgagagaaataagagaacgcaattttggaaaaggaggaaatgatccattgaaattgttgaaactaaaatcccacacctgatcataat 931  T
Q  148 catattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaac-tcgaagagagattccaaa 246  Q
    ||||  |||||||  |||||  |||||| || |||||||| || || || ||||||||||||||||||||||||  ||||| | ||||| | ||||||||    
T  930 cataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaattccaaa 831  T
Q  247 accatttaggaaatg 261  Q
    | |||||||| ||||    
T  830 atcatttagggaatg 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 15919 - 15705
Alignment:
Q  55 taaacatattatttgagagaaata-gagcatacaactctggaaaaggaggcagtgaaccattcaaattgttgaaactaaaatcccaca------cattct 147  Q
    |||||||||||||||||||||||| ||| |  ||| | |||||||||||| | ||| ||||| |||||||||||||||||||||||||      |||  |    
T  15919 taaacatattatttgagagaaataagagaacgcaattttggaaaaggaggaaatgatccattgaaattgttgaaactaaaatcccacacctgatcataat 15820  T
Q  148 catattttactttcatacttataaatgactttggcaagggtcctttaagattgttatgtgaaacattcaagtatcgcaaac-tcgaagagagattccaaa 246  Q
    ||||  |||||||  |||||  |||||| || |||||||| || || || ||||||||||||||||||||||||  ||||| | ||||| | ||||||||    
T  15819 cataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaattccaaa 15720  T
Q  247 accatttaggaaatg 261  Q
    | |||||||| ||||    
T  15719 atcatttagggaatg 15705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 780 - 731
Alignment:
Q  308 ttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatg 357  Q
    ||||||||||| ||||  ||||||||||||||| |||||||| |||||||    
T  780 ttgatgtttgaaccatgctggaaatttaggacccaatgtgcatgatgatg 731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 15669 - 15620
Alignment:
Q  308 ttgatgtttgagccatattggaaatttaggacctaatgtgcacgatgatg 357  Q
    ||||||||||| ||||  ||||||||||||||| |||||||| |||||||    
T  15669 ttgatgtttgaaccatgctggaaatttaggacccaatgtgcatgatgatg 15620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 173026 - 173157
Alignment:
Q  18 agagacgaggatgcacaaaaagaagataaa----gactctgtaaacatattatttgagagaaatagagcatacaactctggaaaaggaggcagtgaacca 113  Q
    ||||| ||||||| |||||||||| ||||     ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||||    
T  173026 agagatgaggatgtacaaaaagaatataattaaggaccctgtaaacatattatttgagagaaatagggcatactactctggaaaaggaggcagcaaacca 173125  T
Q  114 ttcaaattgttgaaactaaaatcccacacatt 145  Q
    ||||| ||||||||||||| ||||||||||||    
T  173126 ttcaatttgttgaaactaagatcccacacatt 173157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 16423 - 16552
Alignment:
Q  18 agagacgaggatgcacaaaaagaagataaagactctgtaaacatattatttgagagaaataga---gcatacaactctggaaaaggaggcagtgaaccat 114  Q
    ||||| ||||||| |||||||||| | || || | ||||||||||||||||||||||||||     ||| |||  | |||||||||||||| ||||||||    
T  16423 agagatgaggatgtacaaaaagaatacaaggagtttgtaaacatattatttgagagaaataatactgcacacagttttggaaaaggaggcaatgaaccat 16522  T
Q  115 tcaaattgttgaaactaaaatcccacacat 144  Q
    | ||||||||||||||||||||| ||||||    
T  16523 tgaaattgttgaaactaaaatccaacacat 16552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 16687 - 16755
Alignment:
Q  324 attggaaatttaggacctaatgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaatc 394  Q
    |||||||||||||||||||||||||| ||||||||||  || |||||||| |||||||||| |||||||||    
T  16687 attggaaatttaggacctaatgtgcatgatgatgcat--aaagtttctagtttgaaaggtggaacccaatc 16755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 18146 - 18072
Alignment:
Q  321 catattggaaatttaggaccta--atgtgcacgatgatgcatacaatgtttctaggttgaaaggtgcaacccaat 393  Q
    ||||||||||||||||||||||  ||||||| ||||||||||| | | ||||||| |||||||||| || |||||    
T  18146 catattggaaatttaggacctataatgtgcatgatgatgcatatagtctttctagtttgaaaggtggaaaccaat 18072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 16611 - 16673
Alignment:
Q  207 gaaacattcaagtatcgcaaactcgaagagagatt-ccaaaaccatttaggaaatgaatctga 268  Q
    |||||| |||||  | ||||||||||||| || || |||||||||||||||||||||||||||    
T  16611 gaaacactcaagatttgcaaactcgaagatagctttccaaaaccatttaggaaatgaatctga 16673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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