View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_25 (Length: 402)

Name: NF5478_high_25
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_25
NF5478_high_25
[»] chr2 (1 HSPs)
chr2 (292-383)||(7468793-7468888)
[»] chr7 (1 HSPs)
chr7 (130-190)||(9455002-9455062)
[»] chr4 (1 HSPs)
chr4 (286-369)||(8304253-8304336)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 7468793 - 7468888
Alignment:
Q  292 aatcacccttcattttgggtttat----tcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaattgagtgtccaatg 383  Q
    ||||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7468793 aatcacccttcattttgggtttatatattcagcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagatattgagtgtccaatg 7468888  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 9455062 - 9455002
Alignment:
Q  130 cctcctcatggtggtcctcatgagatctaactttgtcgttatcttcctcctttgtattatc 190  Q
    ||||||||||||||||||| ||||||  ||| || |||||||||||||||| ||| |||||    
T  9455062 cctcctcatggtggtcctcgtgagattaaacattatcgttatcttcctcctctgtcttatc 9455002  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 8304253 - 8304336
Alignment:
Q  286 tagaagaatcacccttcattttgggtttattcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaa 369  Q
    ||||| |||||||||||| ||||| ||||| |||||||||| | ||||| |||||||  ||||| |  ||||||| ||||||||    
T  8304253 tagaataatcacccttcaatttggctttatccggcttcaccctatcctcattgttctctgggtgcaatttgttgcgaagagaaa 8304336  T

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