View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_27 (Length: 380)

Name: NF5478_high_27
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_27
NF5478_high_27
[»] chr7 (9 HSPs)
chr7 (80-307)||(46756270-46756497)
chr7 (260-309)||(44909360-44909409)
chr7 (260-307)||(45887279-45887326)
chr7 (150-213)||(48911107-48911170)
chr7 (261-301)||(9222650-9222690)
chr7 (258-302)||(20890204-20890248)
chr7 (259-307)||(27599211-27599259)
chr7 (259-307)||(27600095-27600143)
chr7 (260-308)||(45887981-45888029)
[»] chr6 (7 HSPs)
chr6 (80-265)||(26471436-26471622)
chr6 (259-307)||(24125972-24126020)
chr6 (259-307)||(24126718-24126766)
chr6 (259-309)||(33018416-33018466)
chr6 (259-307)||(1034721-1034769)
chr6 (272-308)||(22856349-22856385)
chr6 (268-300)||(27763420-27763452)
[»] chr2 (10 HSPs)
chr2 (135-307)||(41985768-41985940)
chr2 (18-147)||(41985228-41985357)
chr2 (308-361)||(41222010-41222063)
chr2 (259-293)||(36390971-36391005)
chr2 (259-300)||(13134325-13134366)
chr2 (271-300)||(30545447-30545476)
chr2 (259-308)||(37545675-37545724)
chr2 (271-300)||(44154283-44154312)
chr2 (271-300)||(44154994-44155023)
chr2 (267-307)||(4975696-4975736)
[»] chr1 (9 HSPs)
chr1 (18-83)||(43016904-43016969)
chr1 (260-312)||(11469076-11469128)
chr1 (260-307)||(14924674-14924721)
chr1 (260-307)||(14925343-14925390)
chr1 (259-308)||(45922231-45922280)
chr1 (240-293)||(46134598-46134651)
chr1 (267-307)||(31787478-31787518)
chr1 (259-307)||(47334900-47334948)
chr1 (261-293)||(50950897-50950929)
[»] chr3 (5 HSPs)
chr3 (260-308)||(38337478-38337526)
chr3 (267-307)||(42108370-42108410)
chr3 (260-307)||(38336944-38336991)
chr3 (240-307)||(40820490-40820557)
chr3 (259-300)||(19132812-19132853)
[»] chr8 (10 HSPs)
chr8 (267-307)||(12349967-12350007)
chr8 (267-307)||(43925026-43925066)
chr8 (261-308)||(12350656-12350703)
chr8 (260-307)||(43924490-43924537)
chr8 (267-301)||(11676979-11677013)
chr8 (240-293)||(13935035-13935087)
chr8 (259-308)||(32328766-32328815)
chr8 (267-307)||(32574816-32574856)
chr8 (259-307)||(39254787-39254835)
chr8 (260-308)||(39862903-39862951)
[»] chr4 (12 HSPs)
chr4 (259-307)||(6246784-6246832)
chr4 (210-307)||(232001-232097)
chr4 (259-310)||(47377598-47377649)
chr4 (261-307)||(6247473-6247519)
chr4 (260-302)||(10421582-10421624)
chr4 (259-307)||(47376852-47376900)
chr4 (261-303)||(15481572-15481614)
chr4 (259-300)||(1014006-1014047)
chr4 (259-300)||(10424130-10424171)
chr4 (239-308)||(47199375-47199444)
chr4 (239-283)||(1013348-1013392)
chr4 (272-308)||(15481034-15481070)
[»] scaffold0189 (2 HSPs)
scaffold0189 (267-307)||(12184-12224)
scaffold0189 (259-307)||(12859-12907)
[»] chr5 (10 HSPs)
chr5 (259-307)||(473044-473092)
chr5 (260-308)||(2319968-2320016)
chr5 (260-308)||(9142046-9142094)
chr5 (261-293)||(42651581-42651613)
chr5 (261-308)||(6803947-6803994)
chr5 (239-300)||(13654940-13655001)
chr5 (260-293)||(26712389-26712422)
chr5 (260-293)||(26982127-26982160)
chr5 (259-307)||(26711568-26711616)
chr5 (259-307)||(26981305-26981353)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 80 - 307
Target Start/End: Complemental strand, 46756497 - 46756270
Alignment:
Q  80 tattttaatcgattttaattgatttagttagaaattagttttgaaactagctctgaataatcaatttcaatctcatggggttgaagataatgaggttgaa 179  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46756497 tattttaatcgattttaattgatttagttagaaatcagttttaaaactaactctgaataatcaatttcaatctcatggggttgaagataatgcggttgaa 46756398  T
Q  180 gacaatatgaaataaatatatgatgtaggtagactatgataagatcagtgttcctataaaatctaatggtaaaaagtccactttcctatggtgggaaaca 279  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  46756397 gacaatatgaaataaatatatggtgtaggtagactatgataagatcagcgttcctataaaatctaatggtaaaaagtccacttttccatggtggaaaaca 46756298  T
Q  280 acttccctttcccaaattaaacgccacc 307  Q
    ||||||||||||||||||||||||||||    
T  46756297 acttccctttcccaaattaaacgccacc 46756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 44909360 - 44909409
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacctc 309  Q
    |||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  44909360 ctttcccatggtgggaaaaaacttacctttcccaaattaaacggcacctc 44909409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 45887326 - 45887279
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  45887326 ctttcccatggtgggaaaaaactagcctttcccaaattaaacgccacc 45887279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 48911107 - 48911170
Alignment:
Q  150 tctcatggggttgaagataatgaggttgaagacaatatgaaataaatatatgatgtaggtagac 213  Q
    ||||||| |||||| |||||| |||||||||| ||  ||||||||| ||||||||||| |||||    
T  48911107 tctcatgaggttgatgataataaggttgaagataaagtgaaataaagatatgatgtagatagac 48911170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 9222650 - 9222690
Alignment:
Q  261 tttcctatggtgggaaacaacttccctttcccaaattaaac 301  Q
    ||||||||||||||||||||||   ||||||||||||||||    
T  9222650 tttcctatggtgggaaacaactagtctttcccaaattaaac 9222690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 20890248 - 20890204
Alignment:
Q  258 cactttcctatggtgggaaacaacttccctttcccaaattaaacg 302  Q
    |||||||| ||||||||||| ||||  ||||||||||||||||||    
T  20890248 cactttcccatggtgggaaaaaactgtcctttcccaaattaaacg 20890204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 27599259 - 27599211
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| |||||||||||||||| ||||||||||  ||||| ||||||    
T  27599259 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 27600095 - 27600143
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| |||||||||||||||| ||||||||||  ||||| ||||||    
T  27600095 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 45887981 - 45888029
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    |||||| ||||||||||| ||||  |||||||||||||||| |||||||    
T  45887981 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccacct 45888029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 26471436 - 26471622
Alignment:
Q  80 tattttaatcgattttaattgatttagttagaaatt-agttttgaaactagctctgaataatcaatttcaatctcatggggttgaagataatgaggttga 178  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26471436 tattttaatcgattttaattgatttagttagaaaatcagttttgaaactagctctaaataatcaatttcaatctcatggggttgaagataatgaggttga 26471535  T
Q  179 agacaatatgaaataaatatatgatgtaggtagactatgataagatcagtgttcctataaaatctaatggtaaaaagtccactttcc 265  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  26471536 agacagtatgaaataaatatatggtgtaggtagactatgataagatcagtgttcctacaaaatttaatggtaaaaagtccactttcc 26471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 24126020 - 24125972
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  24126020 actttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 24126718 - 24126766
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| ||||||    
T  24126718 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 33018416 - 33018466
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacctc 309  Q
    ||||||| ||||||||||| ||||  |||||||||||||||||| ||||||    
T  33018416 actttcccatggtgggaaagaactctcctttcccaaattaaacgacacctc 33018466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 1034769 - 1034721
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||| || ||||  |||||||||||||||||| ||||    
T  1034769 actttcctatggtggggaaaaactaacctttcccaaattaaacgacacc 1034721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 22856385 - 22856349
Alignment:
Q  272 gggaaacaacttccctttcccaaattaaacgccacct 308  Q
    |||||| |||||||||||||||||||||||| |||||    
T  22856385 gggaaagaacttccctttcccaaattaaacggcacct 22856349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 27763452 - 27763420
Alignment:
Q  268 tggtgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||||||||||||||||| |||||||||||    
T  27763452 tggtgggaaacaacttcccttccccaaattaaa 27763420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 41985768 - 41985940
Alignment:
Q  135 aataatcaatttcaatctcatggggttgaagataatgaggttgaagacaatatgaaataaatatatgatgtaggtagactatgataagatcagtgttcct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  41985768 aataatcaatttcaatctcatggggttgaagataatgaggttgaagacaatatgaaataaatatatggtgtaggtagactatgataagatcagtgttctt 41985867  T
Q  235 ataaaatctaatggtaaaaagtccactttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  41985868 ataaaatttaatggtaaaaagtccactttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 41985228 - 41985357
Alignment:
Q  18 cctcatgcttcgaaccatcctgaatatcaattaaacgaaacacgtcagagacactgaaaaagtattttaatcgattttaattgatttagttagaaattag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41985228 cctcatgcttcgaaccatcctgaatatcaattaaacgaaacacgtcagagacactgaaaaagtattttaatcgattttaattgatttagttagaaatcag 41985327  T
Q  118 ttttgaaactagctctgaataatcaatttc 147  Q
    |||||||||||||||| |||||||||||||    
T  41985328 ttttgaaactagctctaaataatcaatttc 41985357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 41222063 - 41222010
Alignment:
Q  308 tctatccatataagcgtgcacaatgtggaatgtacctgatagactcttgtcctt 361  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41222063 tctatccatataagcgcgcacaatgtggaatgtacctgatagactcttgtcctt 41222010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 36391005 - 36390971
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttccca 293  Q
    ||||||| |||||||||||||||||||||||||||    
T  36391005 actttcccatggtgggaaacaacttccctttccca 36390971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 13134366 - 13134325
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  13134366 actttcctatggtgggaaagaactctcctttcccaaattaaa 13134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 30545447 - 30545476
Alignment:
Q  271 tgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||||||||||||||||||||||||||    
T  30545447 tgggaaacaacttccctttcccaaattaaa 30545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 37545724 - 37545675
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    ||||||| ||||||||||||||||||||||||| |  ||||| |||||||    
T  37545724 actttcccatggtgggaaacaacttccctttcctattttaaatgccacct 37545675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 44154312 - 44154283
Alignment:
Q  271 tgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||||||||||||||||||||||||||    
T  44154312 tgggaaacaacttccctttcccaaattaaa 44154283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 44154994 - 44155023
Alignment:
Q  271 tgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||||||||||||||||||||||||||    
T  44154994 tgggaaacaacttccctttcccaaattaaa 44155023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 4975736 - 4975696
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||||| |||||| | |||||||||||    
T  4975736 atggtgggaaacaacttcccattcccatactaaacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 43016904 - 43016969
Alignment:
Q  18 cctcatgcttcgaaccatcctgaatatcaattaaacgaaacacgtcagagacactgaaaaagtatt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43016904 cctcatgcttcgaaccatcctgaatatcaattaaacgaaacacatcagagacactgaaaaagtatt 43016969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 11469128 - 11469076
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacctctat 312  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  11469128 ctttcccatggtgggaaacaacttccctttcctaaattaaacgccaccactat 11469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 14924721 - 14924674
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  14924721 ctttcccatggtgggaaacaacttccctttcccaaattaaacaccacc 14924674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 14925343 - 14925390
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  14925343 ctttcccatggtgggaaacaactttccttccccaaattaaacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 45922280 - 45922231
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    ||||||| ||||||||||||||| |||||||||||  |||||| ||||||    
T  45922280 actttcccatggtgggaaacaacctccctttcccatgttaaactccacct 45922231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 46134598 - 46134651
Alignment:
Q  240 atctaatggtaaaaagtccactttcctatggtgggaaacaacttccctttccca 293  Q
    |||||||||||||||||    ||||| ||| |||||||||||||||||||||||    
T  46134598 atctaatggtaaaaagtaagttttcccatgatgggaaacaacttccctttccca 46134651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 31787518 - 31787478
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||||| |||||| | |||||||||||    
T  31787518 atggtgggaaacaacttcccattcccatactaaacgccacc 31787478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 47334900 - 47334948
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||||||||| || ||||||| | |||| ||||||    
T  47334900 actttcctatggtgggaaacaactcccttttcccatactaaatgccacc 47334948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 50950897 - 50950929
Alignment:
Q  261 tttcctatggtgggaaacaacttccctttccca 293  Q
    |||||||||||||||||||||||||| ||||||    
T  50950897 tttcctatggtgggaaacaacttcccattccca 50950929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 38337478 - 38337526
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38337478 ctttcccatggtgggaaacaacttccctttcccaaattaaacgccacct 38337526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 38336991 - 38336944
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  38336991 ctttcccatggtgggaaacaacttcccttccccaaattaaatgccacc 38336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 40820490 - 40820557
Alignment:
Q  240 atctaatggtaaaaagtccactttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||||||||||  || ||||||| ||||||||||| |||||| ||  |||| |||||||||||||    
T  40820490 atctaatggtaaaatatcaactttcccatggtgggaaaaaacttcactgccccatattaaacgccacc 40820557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 19132812 - 19132853
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  19132812 actttcccatggtgggaaagaactttcctttcccaaattaaa 19132853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 12350007 - 12349967
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12350007 atggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 43925026 - 43925066
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43925026 atggtgggaaacaacttccctttcccaaattaaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 12350656 - 12350703
Alignment:
Q  261 tttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  12350656 tttcccatggtgggaaacaatttccctttcccaaattaaacgccacct 12350703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 43924537 - 43924490
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 11677013 - 11676979
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaac 301  Q
    ||||||||||| |||||||||||||||||||||||    
T  11677013 atggtgggaaagaacttccctttcccaaattaaac 11676979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 13935035 - 13935087
Alignment:
Q  240 atctaatggtaaaaagtccactttcctatggtgggaaacaacttccctttccca 293  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||| |||||||||    
T  13935035 atctaatggttaaaagtg-actttcctatggtggaaaacaactttcctttccca 13935087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 32328766 - 32328815
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    ||||||||||  ||||||| ||||  ||||||||||||||||||||||||    
T  32328766 actttcctatcatgggaaaaaactatcctttcccaaattaaacgccacct 32328815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 32574816 - 32574856
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  32574816 atggtgggaaacaacttctcattcccatattaaacgccacc 32574856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 39254835 - 39254787
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||||||||||||||| || |  |||||||||||||||| ||||||    
T  39254835 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 39862903 - 39862951
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    |||||||||||||||||||||| |||| ||||||  |||||| ||||||    
T  39862903 ctttcctatggtgggaaacaacatcccattcccaggttaaaccccacct 39862951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 6246832 - 6246784
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  6246832 actttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 232001 - 232097
Alignment:
Q  210 agactatgataagatcagtgttcctataaaatctaatggtaaaaagtccactttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||||||||||||| |||||||     |||||||||| |||| |  ||||||| ||||||||||||||||||||||||||| | ||||| |||||    
T  232001 agactatgataagatcaatgttcctcatttatctaatggttaaaattt-actttcccatggtgggaaacaacttccctttcccatactaaaccccacc 232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 47377598 - 47377649
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacctct 310  Q
    ||||||| |||||||||||||||| ||||||||||||||||| | |||||||    
T  47377598 actttcccatggtgggaaacaactcccctttcccaaattaaatggcacctct 47377649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 6247473 - 6247519
Alignment:
Q  261 tttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||    
T  6247473 tttcccatgatgagaaacaacttccctttcccaaattaaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 10421582 - 10421624
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacg 302  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  10421582 ctttcccatggtggaaaacaacttccctttcccaaattaaacg 10421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 47376900 - 47376852
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| ||||||    
T  47376900 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 15481572 - 15481614
Alignment:
Q  261 tttcctatggtgggaaacaacttccctttcccaaattaaacgc 303  Q
    ||||| || ||||||||||||||||||||| ||||||||||||    
T  15481572 tttcccattgtgggaaacaacttccctttcgcaaattaaacgc 15481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 1014006 - 1014047
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||| |||||||||||||||||| ||| |||||||||||    
T  1014006 actttcccatggtgggaaacaacttcacttacccaaattaaa 1014047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 10424171 - 10424130
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  10424171 actttcctatggtgggaaagaactctcctttcccaaattaaa 10424130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 47199375 - 47199444
Alignment:
Q  239 aatctaatggtaaaaagtccactttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    ||||||||||||||||    ||||||||||||||||||| || |  | |||||||||||||| |||||||    
T  47199375 aatctaatggtaaaaaaatgactttcctatggtgggaaagaagtctcttttcccaaattaaatgccacct 47199444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 1013392 - 1013348
Alignment:
Q  239 aatctaatggtaaaaagtccactttcctatggtgggaaacaactt 283  Q
    ||||||||||||||||  | ||||||||||||||||||| |||||    
T  1013392 aatctaatggtaaaaatccaactttcctatggtgggaaaaaactt 1013348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 15481070 - 15481034
Alignment:
Q  272 gggaaacaacttccctttcccaaattaaacgccacct 308  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  15481070 gggaaacaacttcccttccccaaattaaacgtcacct 15481034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 12224 - 12184
Alignment:
Q  267 atggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  12224 atggtgggaaacaacttctctttcccaaattaaacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 12859 - 12907
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  12859 actttcccatggtgggaaacaacttcacttccccaaattaaacgccacc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 473044 - 473092
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||| |||||||||||||| |||||||||||||| |||||| ||||||    
T  473044 acttttctatggtgggaaacgacttccctttcccatattaaatgccacc 473092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 2319968 - 2320016
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    |||||||||||||||||| ||||  |||||||||||||||| |||||||    
T  2319968 ctttcctatggtgggaaaaaactagcctttcccaaattaaatgccacct 2320016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 9142094 - 9142046
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    |||||| ||||||||||||||||||||||||||| | |||| |||||||    
T  9142094 ctttcccatggtgggaaacaacttccctttcccatactaaatgccacct 9142046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 42651581 - 42651613
Alignment:
Q  261 tttcctatggtgggaaacaacttccctttccca 293  Q
    |||||||||||||||||||||||||||||||||    
T  42651581 tttcctatggtgggaaacaacttccctttccca 42651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 6803994 - 6803947
Alignment:
Q  261 tttcctatggtgggaaacaacttccctttcccaaattaaacgccacct 308  Q
    ||||||||||| ||||||||||||||||||||| | ||||| ||||||    
T  6803994 tttcctatggtaggaaacaacttccctttcccatactaaaccccacct 6803947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 13655001 - 13654940
Alignment:
Q  239 aatctaatggtaaaaagtccactttcctatggtgggaaacaacttccctttcccaaattaaa 300  Q
    ||||||||||||||||    ||||||||||||||||||| || |  ||||||||||||||||    
T  13655001 aatctaatggtaaaaaaaagactttcctatggtgggaaagaagtctcctttcccaaattaaa 13654940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Original strand, 26712389 - 26712422
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttccca 293  Q
    |||||| |||||||||||||||||||||||||||    
T  26712389 ctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Original strand, 26982127 - 26982160
Alignment:
Q  260 ctttcctatggtgggaaacaacttccctttccca 293  Q
    |||||| |||||||||||||||||||||||||||    
T  26982127 ctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 26711616 - 26711568
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||||||| ||||||||||||| ||||||||| | ||||| |||||    
T  26711616 actttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 26981353 - 26981305
Alignment:
Q  259 actttcctatggtgggaaacaacttccctttcccaaattaaacgccacc 307  Q
    ||||||||||| ||||||||||||| ||||||||| | ||||| |||||    
T  26981353 actttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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