View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_3 (Length: 781)

Name: NF5478_high_3
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_3
NF5478_high_3
[»] chr4 (5 HSPs)
chr4 (17-257)||(166986-167225)
chr4 (450-573)||(167262-167384)
chr4 (261-440)||(2306647-2306827)
chr4 (17-86)||(106859-106928)
chr4 (689-772)||(167481-167564)
[»] chr8 (2 HSPs)
chr8 (258-442)||(21538084-21538269)
chr8 (393-442)||(37633313-37633362)
[»] chr7 (2 HSPs)
chr7 (267-442)||(13332658-13332834)
chr7 (17-86)||(13055282-13055351)
[»] chr1 (3 HSPs)
chr1 (360-442)||(35840792-35840875)
chr1 (256-310)||(35840678-35840732)
chr1 (256-336)||(41570406-41570487)
[»] scaffold0013 (1 HSPs)
scaffold0013 (17-82)||(88553-88618)
[»] chr6 (1 HSPs)
chr6 (363-442)||(4087928-4088006)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 166986 - 167225
Alignment:
Q  17 atgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttccattgccttccactgtgactaccctttaaagaatcaggcaaataa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  166986 atgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttccattgccttccactgtgactacactttaaa-aatcaggcaaataa 167084  T
Q  117 aaccaatcaagttgataagttaatttttcttatgctggatgtgttcttgcacgttttcatttccaaaaggaatgagttcaaataaccggaagnnnnnnnn 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  167085 aaccaatcaagttgataagttaatttttcttatgctggatgtgttcttgcacgttttcatttccaaaaggaatgagttcaaataaccggaagaaaaaaga 167184  T
Q  217 nngaaataagttggccaattttggcgttgggatatatacat 257  Q
      |||||||||||||||||||||||||||||||||||||||    
T  167185 aagaaataagttggccaattttggcgttgggatatatacat 167225  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 450 - 573
Target Start/End: Original strand, 167262 - 167384
Alignment:
Q  450 atcaagtgattaatgactaaatattcaccacactgagattaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctaccaat 549  Q
    ||||||||||||||||||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  167262 atcaagtgattaatgactaaatattcaccgcaca-aggttaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctatcaat 167360  T
Q  550 caagttatgttcactaagacaatg 573  Q
    | |||||||||||||| |||||||    
T  167361 cgagttatgttcactaggacaatg 167384  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 261 - 440
Target Start/End: Complemental strand, 2306827 - 2306647
Alignment:
Q  261 caatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaca-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnnnnn 359  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||| ||||| | |||||||||||||||||||||||||||                        
T  2306827 caatgctattatccacgaatgaaagtaaacgaaaatcacgaattctactaaagtgattttcacaaacattattttaatataaaaataaaaaacaaaagaa 2306728  T
Q  360 gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttc 440  Q
    || |||||||||||||||||||| || ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2306727 gttgcatttggtggaatacacgctatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttc 2306647  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 106859 - 106928
Alignment:
Q  17 atgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttccattgccttccactg 86  Q
    |||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  106859 atgtatagagatatttaccccttgtgggctctagccgagtatcgtagacgggttccattgccttccactg 106928  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 689 - 772
Target Start/End: Original strand, 167481 - 167564
Alignment:
Q  689 atgacattttatgcgtcactgaatggataatattcttcataatataacnnnnnnnnttatgctattactttttccaccctatgc 772  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  167481 atgacattttatggaccactgaatggataatattcttcataatataacaaaaaaaattatgctattactttttccaccctatgc 167564  T

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Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 258 - 442
Target Start/End: Original strand, 21538084 - 21538269
Alignment:
Q  258 cagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaca-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnn 356  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||                     
T  21538084 cagcaatgctattaaccacgaatgaaaataaacgaaaaccacgaattgtactaaagtgattttcacaaatattattttaatataaaaataaaaaacaaaa 21538183  T
Q  357 nnngtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 442  Q
       |||||||||||||||||||||||||  ||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  21538184 aaagtagcatttggtggaatacacgccagcgtatattgtaattcgtattttccgtggattcagtttcgtgggaaatggtatttccc 21538269  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 37633362 - 37633313
Alignment:
Q  393 tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 442  Q
    |||||||||||||||||||  ||||| |||||| ||| ||||||||||||    
T  37633362 tgtaattcgtatttcccgtgaattcactttcgtaggatatggcatttccc 37633313  T

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Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 267 - 442
Target Start/End: Original strand, 13332658 - 13332834
Alignment:
Q  267 tattaaccacgaatgaaaataaaccaaaaccacgaattgtactaca-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnnnnngtagca 365  Q
    |||||||||||||| ||||||||| |||||||| |||||||||| | |||||||||||||||||||||||||||                    ||||||    
T  13332658 tattaaccacgaattaaaataaacgaaaaccacaaattgtactaaagtgattttcacaaacattattttaatataaaaataaaaaacaaaaaaagtagca 13332757  T
Q  366 tttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 442  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13332758 tttggtggaatacaagccatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttccc 13332834  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 13055282 - 13055351
Alignment:
Q  17 atgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttccattgccttccactg 86  Q
    |||||||||||||||||||||||||||||| || | |||||||||||| | ||||||||| |||||||||    
T  13055282 atgtatagagatattttcccattgtgggctttagctgagtatcgtagatatgttccattgtcttccactg 13055351  T

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Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 360 - 442
Target Start/End: Original strand, 35840792 - 35840875
Alignment:
Q  360 gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaat-ggcatttccc 442  Q
    |||||||| ||||||||||| ||||| ||||| | |||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  35840792 gtagcattcggtggaatacatgccatcgtatagtataattcgtattttccgtggattcagtttcgtgggaaatgggcatttccc 35840875  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 35840678 - 35840732
Alignment:
Q  256 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtacta 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  35840678 atcagcaatgctattaaccacgaatgaaaataaacgaaaaccatgaattgtacta 35840732  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 41570406 - 41570487
Alignment:
Q  256 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaca-tgattttcacaaacattattttaa 336  Q
    ||||||||||||||| |||||||||  ||| |||| ||||| || || ||| ||| | ||||||||||||||||||||||||    
T  41570406 atcagcaatgctattcaccacgaatagaaacaaacgaaaacgacaaactgtgctaaagtgattttcacaaacattattttaa 41570487  T

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Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 88618 - 88553
Alignment:
Q  17 atgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttccattgccttcc 82  Q
    ||||||||| ||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  88618 atgtatagaaatatttttccattgtgggctctggctgagtatcgtagacgggttccattgccttcc 88553  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 442
Target Start/End: Complemental strand, 4088006 - 4087928
Alignment:
Q  363 gcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 442  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||| | || ||||||| || |||||||  |||||||    
T  4088006 gcatttggtggaatacacgccatcgtattgtgtaattcgtatttcccttgga-tcagtttagtaggaaatgatatttccc 4087928  T

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