View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_31 (Length: 349)

Name: NF5478_high_31
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_31
NF5478_high_31
[»] chr7 (33 HSPs)
chr7 (98-246)||(44686775-44686927)
chr7 (247-344)||(44686628-44686725)
chr7 (11-101)||(44686972-44687062)
chr7 (10-102)||(36598293-36598385)
chr7 (16-79)||(431376-431439)
chr7 (51-98)||(29290378-29290425)
chr7 (12-82)||(31751698-31751768)
chr7 (15-92)||(41040216-41040293)
chr7 (51-102)||(39539759-39539810)
chr7 (52-102)||(3500946-3500996)
chr7 (52-102)||(6857318-6857368)
chr7 (36-102)||(12234852-12234918)
chr7 (56-102)||(45078319-45078365)
chr7 (52-102)||(48157099-48157149)
chr7 (14-102)||(24967102-24967190)
chr7 (54-102)||(27626104-27626152)
chr7 (56-96)||(28520995-28521035)
chr7 (50-102)||(39551525-39551577)
chr7 (52-96)||(44615083-44615127)
chr7 (51-102)||(15740389-15740440)
chr7 (63-102)||(39771802-39771841)
chr7 (56-94)||(941589-941627)
chr7 (52-102)||(12834941-12834991)
chr7 (52-94)||(33645940-33645982)
chr7 (52-102)||(46082077-46082127)
chr7 (57-102)||(2767162-2767207)
chr7 (52-89)||(28340399-28340436)
chr7 (99-172)||(30496629-30496701)
chr7 (10-102)||(46281079-46281169)
chr7 (14-102)||(23214896-23214984)
chr7 (52-96)||(28844537-28844581)
chr7 (26-94)||(36537957-36538025)
chr7 (26-102)||(39566160-39566236)
[»] chr8 (26 HSPs)
chr8 (14-102)||(43368641-43368729)
chr8 (26-102)||(14949907-14949983)
chr8 (26-102)||(7714283-7714359)
chr8 (14-102)||(9700042-9700130)
chr8 (9-100)||(39049315-39049406)
chr8 (26-102)||(11569410-11569486)
chr8 (54-102)||(31875576-31875624)
chr8 (52-102)||(5088893-5088943)
chr8 (52-94)||(30987970-30988012)
chr8 (57-102)||(39551193-39551238)
chr8 (15-102)||(6950363-6950450)
chr8 (51-102)||(9835878-9835929)
chr8 (27-102)||(11770965-11771040)
chr8 (56-102)||(12361233-12361279)
chr8 (52-94)||(30600328-30600370)
chr8 (12-73)||(7918720-7918781)
chr8 (70-102)||(5231842-5231874)
chr8 (52-84)||(8558719-8558751)
chr8 (52-84)||(9540975-9541007)
chr8 (52-96)||(11118976-11119020)
chr8 (26-102)||(13000377-13000453)
chr8 (58-102)||(25869251-25869295)
chr8 (57-97)||(29262858-29262898)
chr8 (52-80)||(30191120-30191148)
chr8 (52-84)||(37740406-37740438)
chr8 (52-80)||(40071812-40071840)
[»] chr3 (36 HSPs)
chr3 (18-95)||(1810025-1810102)
chr3 (52-102)||(37273175-37273225)
chr3 (17-102)||(37155042-37155127)
chr3 (17-102)||(37200397-37200482)
chr3 (52-102)||(49465915-49465965)
chr3 (10-102)||(24624251-24624343)
chr3 (10-102)||(29771879-29771971)
chr3 (35-102)||(11039301-11039368)
chr3 (52-99)||(20192585-20192632)
chr3 (54-101)||(31010444-31010491)
chr3 (52-102)||(3015822-3015872)
chr3 (64-102)||(13804818-13804856)
chr3 (52-102)||(36646361-36646411)
chr3 (56-102)||(41724253-41724299)
chr3 (21-94)||(49772616-49772689)
chr3 (62-102)||(3044248-3044288)
chr3 (51-102)||(27290879-27290930)
chr3 (27-102)||(30923853-30923927)
chr3 (54-101)||(31710868-31710915)
chr3 (54-101)||(31711123-31711170)
chr3 (53-96)||(42537087-42537130)
chr3 (52-103)||(42817201-42817252)
chr3 (51-102)||(43115097-43115148)
chr3 (51-101)||(1217778-1217828)
chr3 (56-102)||(5391920-5391966)
chr3 (10-80)||(48588720-48588790)
chr3 (56-102)||(50004693-50004739)
chr3 (52-102)||(52323873-52323923)
chr3 (57-102)||(14598537-14598582)
chr3 (52-101)||(24281089-24281138)
chr3 (15-80)||(26330265-26330330)
chr3 (63-96)||(30750047-30750080)
chr3 (27-96)||(45541618-45541687)
chr3 (53-102)||(48048962-48049011)
chr3 (10-94)||(2304208-2304292)
chr3 (63-103)||(34707486-34707526)
[»] chr5 (30 HSPs)
chr5 (14-92)||(17259268-17259346)
chr5 (29-93)||(11457148-11457212)
chr5 (47-96)||(18700431-18700480)
chr5 (26-102)||(11297149-11297225)
chr5 (52-96)||(11700357-11700401)
chr5 (10-102)||(25705596-25705688)
chr5 (52-102)||(32172694-32172744)
chr5 (52-89)||(38047858-38047895)
chr5 (52-89)||(40499705-40499742)
chr5 (52-100)||(2092524-2092572)
chr5 (34-102)||(7674689-7674757)
chr5 (15-75)||(18286859-18286919)
chr5 (52-96)||(34117526-34117570)
chr5 (55-102)||(21768179-21768226)
chr5 (51-102)||(38766523-38766574)
chr5 (51-102)||(41957429-41957480)
chr5 (52-102)||(13604828-13604878)
chr5 (30-95)||(10907426-10907491)
chr5 (57-102)||(36542266-36542311)
chr5 (15-80)||(40159881-40159946)
chr5 (26-102)||(4273330-4273406)
chr5 (10-102)||(8089977-8090069)
chr5 (52-84)||(10152393-10152425)
chr5 (10-97)||(27105888-27105976)
chr5 (52-96)||(29363055-29363099)
chr5 (54-102)||(29590610-29590658)
chr5 (52-96)||(34205288-34205332)
chr5 (52-96)||(37611194-37611238)
chr5 (52-96)||(37787924-37787968)
chr5 (54-94)||(37794679-37794719)
[»] chr4 (29 HSPs)
chr4 (10-102)||(2996614-2996706)
chr4 (16-102)||(11264342-11264428)
chr4 (15-102)||(6987683-6987770)
chr4 (35-102)||(27123314-27123381)
chr4 (52-102)||(41097235-41097285)
chr4 (52-102)||(45128289-45128339)
chr4 (53-102)||(1965982-1966031)
chr4 (51-102)||(28614786-28614837)
chr4 (52-102)||(10812549-10812599)
chr4 (52-102)||(20656078-20656128)
chr4 (52-94)||(21952997-21953039)
chr4 (49-99)||(28749883-28749933)
chr4 (52-89)||(7730654-7730691)
chr4 (52-81)||(7749070-7749099)
chr4 (14-75)||(18628494-18628555)
chr4 (15-96)||(25583639-25583720)
chr4 (33-102)||(25793048-25793117)
chr4 (52-97)||(27725260-27725305)
chr4 (57-94)||(32071917-32071954)
chr4 (56-84)||(2874607-2874635)
chr4 (56-84)||(4243625-4243653)
chr4 (66-102)||(19250587-19250623)
chr4 (51-83)||(25717653-25717685)
chr4 (30-102)||(27721758-27721830)
chr4 (52-96)||(27970105-27970149)
chr4 (10-102)||(29375944-29376036)
chr4 (54-102)||(29467605-29467653)
chr4 (54-94)||(46175658-46175698)
chr4 (15-103)||(55870284-55870372)
[»] chr2 (34 HSPs)
chr2 (10-94)||(15120232-15120316)
chr2 (54-102)||(34652017-34652065)
chr2 (10-102)||(43456644-43456736)
chr2 (51-102)||(9878660-9878711)
chr2 (54-102)||(10285901-10285949)
chr2 (56-100)||(11344753-11344797)
chr2 (10-101)||(9478341-9478432)
chr2 (14-77)||(25609862-25609925)
chr2 (52-102)||(1742011-1742061)
chr2 (64-102)||(1939323-1939361)
chr2 (14-96)||(32821856-32821938)
chr2 (53-102)||(30538153-30538202)
chr2 (57-102)||(41042006-41042051)
chr2 (15-100)||(43985252-43985337)
chr2 (58-102)||(550543-550587)
chr2 (26-94)||(41809198-41809266)
chr2 (51-102)||(28933865-28933915)
chr2 (56-102)||(787373-787419)
chr2 (52-94)||(4550796-4550838)
chr2 (25-103)||(7283036-7283114)
chr2 (16-102)||(8820235-8820321)
chr2 (52-102)||(10285396-10285446)
chr2 (54-96)||(12215854-12215896)
chr2 (52-102)||(14316124-14316174)
chr2 (52-102)||(43065429-43065479)
chr2 (49-78)||(6561402-6561431)
chr2 (51-96)||(44606088-44606133)
chr2 (52-84)||(1830104-1830136)
chr2 (10-70)||(11063266-11063326)
chr2 (12-96)||(17380615-17380698)
chr2 (52-96)||(18884914-18884958)
chr2 (14-90)||(29430811-29430887)
chr2 (53-93)||(29936043-29936083)
chr2 (52-96)||(37186295-37186339)
[»] chr1 (35 HSPs)
chr1 (15-103)||(32515383-32515471)
chr1 (10-102)||(33723319-33723411)
chr1 (53-96)||(17628646-17628689)
chr1 (24-102)||(6262061-6262139)
chr1 (14-96)||(15581301-15581383)
chr1 (56-171)||(42336588-42336702)
chr1 (52-102)||(24153322-24153372)
chr1 (20-102)||(34380486-34380568)
chr1 (52-89)||(17631081-17631118)
chr1 (58-102)||(11695902-11695946)
chr1 (26-102)||(17420244-17420320)
chr1 (34-101)||(27146215-27146283)
chr1 (50-102)||(29723530-29723582)
chr1 (14-102)||(43420299-43420387)
chr1 (15-102)||(6231758-6231845)
chr1 (51-94)||(11639394-11639437)
chr1 (7-102)||(27140519-27140614)
chr1 (61-96)||(35350687-35350722)
chr1 (53-84)||(45327639-45327670)
chr1 (52-94)||(6976973-6977015)
chr1 (10-44)||(14128408-14128442)
chr1 (52-102)||(15579523-15579573)
chr1 (52-90)||(19412576-19412614)
chr1 (56-102)||(35925731-35925777)
chr1 (36-78)||(37175887-37175929)
chr1 (52-102)||(39270404-39270454)
chr1 (54-83)||(12518961-12518990)
chr1 (51-84)||(27145980-27146013)
chr1 (52-84)||(1662632-1662664)
chr1 (62-102)||(4868441-4868481)
chr1 (52-84)||(11560541-11560573)
chr1 (10-78)||(16980868-16980936)
chr1 (52-96)||(26179518-26179562)
chr1 (50-102)||(30259463-30259515)
chr1 (56-84)||(30418165-30418193)
[»] chr6 (37 HSPs)
chr6 (15-102)||(3738110-3738197)
chr6 (52-102)||(32577965-32578015)
chr6 (53-102)||(4246451-4246500)
chr6 (61-102)||(9667973-9668014)
chr6 (50-102)||(9027619-9027671)
chr6 (10-102)||(32171508-32171600)
chr6 (14-94)||(32917246-32917326)
chr6 (51-102)||(2455851-2455902)
chr6 (35-102)||(2460113-2460180)
chr6 (52-102)||(7148707-7148757)
chr6 (107-216)||(32975859-32975967)
chr6 (52-96)||(1669777-1669821)
chr6 (25-73)||(2455683-2455731)
chr6 (54-102)||(33284284-33284332)
chr6 (14-102)||(34939785-34939873)
chr6 (51-102)||(1575936-1575987)
chr6 (38-93)||(2767714-2767769)
chr6 (51-102)||(4420684-4420735)
chr6 (56-99)||(30523703-30523746)
chr6 (51-102)||(31624131-31624182)
chr6 (52-83)||(34404600-34404631)
chr6 (27-101)||(769180-769254)
chr6 (52-102)||(2034425-2034475)
chr6 (10-80)||(3181006-3181076)
chr6 (52-82)||(10616520-10616550)
chr6 (52-102)||(34939554-34939604)
chr6 (25-102)||(3775080-3775157)
chr6 (52-101)||(30863288-30863337)
chr6 (14-79)||(30865547-30865612)
chr6 (52-89)||(31338030-31338067)
chr6 (51-96)||(32976025-32976070)
chr6 (50-102)||(3155216-3155268)
chr6 (25-101)||(8147018-8147094)
chr6 (53-85)||(10032635-10032667)
chr6 (57-97)||(27595551-27595591)
chr6 (57-97)||(27615257-27615297)
chr6 (57-97)||(27693423-27693463)
[»] scaffold0147 (1 HSPs)
scaffold0147 (56-101)||(12687-12732)
[»] scaffold0003 (1 HSPs)
scaffold0003 (55-101)||(306368-306414)
[»] scaffold0311 (1 HSPs)
scaffold0311 (54-102)||(10598-10646)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 44686927 - 44686775
Alignment:
Q  98 cttataagaaaacattttcactttatttttgtattttgttaaagaaataatgtatacataaacactaatatgataggcactgacgacataatcgcgtaa- 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||     
T  44686927 cttataagaaaacattttcactttatttttgtattttgttaaagaaataatgtatacataaacactaatatgataggcactgacttcataatcgcgtaat 44686828  T
Q  197 ---ttaagttgtttatcgaaacaaagcattaatagcaaatagcaacacacaaa 246  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44686827 taattaagttgtttatcgaaacaaagcattaatagcaaatagcaacacacaaa 44686775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 44686725 - 44686628
Alignment:
Q  247 gtatatatatgtaccattgctaatctccgcaaatttcttattagcttcttcatttcccggattcttatcaggatgatacttcaatgcaagctttctat 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44686725 gtatatatatgtaccattgctaatctccgcaaatttcttattagcttcttcatttcccggattcttatcaggatgatacttcaatgcaagctttctat 44686628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 44687062 - 44686972
Alignment:
Q  11 gaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687062 gaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 44686972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 36598293 - 36598385
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| ||||| |||||| || |||||||| |  || | |||||||||||||||| |||||||||||| ||| ||||||||||| |||||    
T  36598293 tgaacttaactactgacataagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttat 36598385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 431439 - 431376
Alignment:
Q  16 tatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatg 79  Q
    ||||||||||||||||||||||||||| |  || ||||||||||| |||||||| |||||||||    
T  431439 tatctactaacataaacatttgtgagattgattgaaagagcttatagaaacaacatatgacatg 431376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 29290425 - 29290378
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaac 98  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  29290425 aagatcttatggaaacaacttatgacatgtccataagctgttttcaac 29290378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 31751698 - 31751768
Alignment:
Q  12 aacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtcc 82  Q
    ||||||| || | |||||| |||||||||||||  ||| ||||||||||||||||||||||||||| ||||    
T  31751698 aacttatgtagtcacataagcatttgtgagactgtttataagagcttatggaaacaacttatgacacgtcc 31751768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 41040293 - 41040216
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtt 92  Q
    ||||||||| | ||||  ||||||||| ||  ||| ||||||||||||||||| |||||||||| |||||||||||||    
T  41040293 ttatctactgatataagtatttgtgaggctctttagaagagcttatggaaacagcttatgacatatccatgagctgtt 41040216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 39539759 - 39539810
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||| |||||    
T  39539759 aagagtttacggaaacaacttatgacatgtccataagctgttttcagcttat 39539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 3500946 - 3500996
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||| |||||    
T  3500946 agagcttatggaaataacttatgacatgtacatcagctgttttcagcttat 3500996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 6857318 - 6857368
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||| |||||| ||||||||| || ||||||||||||||    
T  6857318 agagcttatggaaacagcttatgccatgtccataagttgttttcaacttat 6857368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 12234852 - 12234918
Alignment:
Q  36 tgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| |||  || ||||||| |||||||||||||||||||| || ||||||||||| |||||    
T  12234852 tgtgagactgcttggaatagcttatagaaacaacttatgacatgtctataagctgttttcagcttat 12234918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 45078365 - 45078319
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||    
T  45078365 cttatagaaataacttatgacatgtccataagctgttttcaacttat 45078319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 48157099 - 48157149
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||| |||||    
T  48157099 agagcttatagaaacaacttatgccatgtccataagctgttttcagcttat 48157149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 24967190 - 24967102
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||  |||||||||| |||||||  ||  ||||| ||||||||||||||||| |||| ||||  || |||||||| |||||    
T  24967190 cttatctactagtataaacatttatgagactgtttggaagagattatggaaacaacttataacatatccagaagttgttttcagcttat 24967102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 27626104 - 27626152
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||| |||||||||||||||| | ||||||| |||||||    
T  27626104 agcttatggaaacagcttatgacatgtccataaactgttttaaacttat 27626152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 28520995 - 28521035
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  28520995 cttatggaaacaacttatgacatgtctataagctgttttca 28521035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 39551525 - 39551577
Alignment:
Q  50 aaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| |||||||||||||||||||||||||||| || |||| ||| |||||    
T  39551525 aaagaggttatggaaacaacttatgacatgtccataaggtgttgtcagcttat 39551577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 44615083 - 44615127
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| |||||||||||||||||||||  |||||||||||    
T  44615083 agagcttatgaaaacaacttatgacatgtccacaagctgttttca 44615127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 15740389 - 15740440
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| |||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  15740389 aagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttat 15740440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 39771841 - 39771802
Alignment:
Q  63 aaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  39771841 aaacaacttatgatatgtccataagctgttttcaacttat 39771802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 941627 - 941589
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  941627 cttatggaaacaacttatgacatgtccataagcagtttt 941589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 12834941 - 12834991
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| ||||||||||| |||||||||||||||| | ||||||||| |||||    
T  12834941 agagattatggaaacagcttatgacatgtccataaactgttttcagcttat 12834991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 33645940 - 33645982
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||||||||||||||||||||||||||||| || || ||||||    
T  33645940 agagcttatggaaacaacttatgacatgtctataagttgtttt 33645982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 46082127 - 46082077
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| ||||||||||||||||| |||| || |||||||| |||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttat 46082077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 2767162 - 2767207
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| |||||||||||| |||||||||| | |||||||||||||||    
T  2767162 ttatagaaacaacttattacatgtccatcaactgttttcaacttat 2767207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 28340399 - 28340436
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagct 89  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  28340399 agagcttatgaaaacaacttatgacatgtccataagct 28340436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 30496701 - 30496629
Alignment:
Q  99 ttataagaaaacattttcactttatttttgtattttgttaaagaaataatgtatacataaacactaatatgata 172  Q
    ||||| ||||||| ||| ||||||||||  |||||||||| ||||||| | |||||||||||||| || |||||    
T  30496701 ttatacgaaaacaatttgactttatttta-tattttgttatagaaatagtttatacataaacacttatgtgata 30496629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 46281079 - 46281169
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||||||| || ||||  |  || |||||| ||| |||||||||||||| |||||| || |  |||||||| |||||    
T  46281079 tgaacttatctactaacataaacacttttgag--tgtttgaaagagtttacggaaacaacttatgccatgtctataaattgttttcagcttat 46281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 23214984 - 23214896
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| |||||||| || |||||||  || | |||  ||||| |||||||||||||||| ||||| |||| | |||| |||||    
T  23214984 cttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataagctctattcagcttat 23214896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 28844581 - 28844537
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    ||||||| || |||||||||||||||||||||| || ||||||||    
T  28844581 agagcttctgaaaacaacttatgacatgtccatcagttgttttca 28844537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 36538025 - 36537957
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||||||| |||||||| |  || | ||| ||||||||||||||||||||||||| ||| || ||||||    
T  36538025 cataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgtttt 36537957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 39566160 - 39566236
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| || |||||   ||| |||||||||||||||||  |||| |||||||||| || |||||||| |||||    
T  39566160 cataaacatctgcgagacagtttagaagagcttatggaaacattttatcacatgtccataagttgttttcagcttat 39566236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 43368641 - 43368729
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||| |||||||||||||  ||  || |||||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  43368641 cttatctactaacataagcatttgtgagactggttgtaacagcttatgaaaacaacttatgacatgttcattagctattttcaacttat 43368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 14949983 - 14949907
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||  |||  |||||||||| ||| |||||||||||||||||| ||||||||||| |||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttat 14949907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 7714359 - 7714283
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| ||||||||||  ||  || ||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  7714359 cataaacacttgtgagactgtttggaaaagcttgtggaaacaacttatgaaatgtcgatgagctgttttcaacttat 7714283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 9700130 - 9700042
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| |||||||| ||||||||||  || | ||||||| || || ||| ||||||||||||||| ||||||||||| |||||    
T  9700130 cttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgttttcaccttat 9700042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 39049406 - 39049315
Alignment:
Q  9 atgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactt 100  Q
    |||| ||||||||||| ||||||||||||||||| |  ||   | |||||||| ||||||||||| ||||||| || |||||||||||||||    
T  39049406 atgagcttatctactagcataaacatttgtgagattgtttgtgaaagcttatgaaaacaacttataacatgtcaataagctgttttcaactt 39049315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 11569410 - 11569486
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| || ||||||||||  |||| |||||||||||||||| |||||||||||| ||| || |||||||| |||||    
T  11569410 cataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttat 11569486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 31875576 - 31875624
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  31875576 agcttatggaaacaacttatgacatgtccataagccattttcaacttat 31875624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 5088943 - 5088893
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||  |||| |||||||||| |||||||||||||||||    
T  5088943 agagcttatggaaacagtttataacatgtccataagctgttttcaacttat 5088893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 30987970 - 30988012
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  30987970 agagcttatggaaacaacttatgacatgtccataagctatttt 30988012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 39551193 - 39551238
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||    
T  39551193 ttatggaaacaacttatgacatgtccaaaagctgtttttaacttat 39551238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 6950450 - 6950363
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||  ||||||||||||||||| |  ||   |||||||||| ||||||| ||||||||||| || || |||||||| |||||    
T  6950450 ttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttat 6950363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 9835878 - 9835929
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||    
T  9835878 aagagcttatgtaaacagcttatgacatgttcataagctgttttcatcttat 9835929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 11770965 - 11771040
Alignment:
Q  27 ataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| |||||| |||||  |||||||| |||||| ||||||||||||| ||||| ||  | ||||||||||||||    
T  11770965 ataaatatttgttagactgtttaaaagaacttatgaaaacaacttatgatatgtctatacgttgttttcaacttat 11771040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 12361279 - 12361233
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| |||| | |||||||||||||||| |||||||||||||||||    
T  12361279 cttatagaaatagcttatgacatgtccataagctgttttcaacttat 12361233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 30600328 - 30600370
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||    
T  30600328 agagcttatggaaacaactcatgacatgttcatgagttgtttt 30600370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 7918720 - 7918781
Alignment:
Q  12 aacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttat 73  Q
    ||||||||||||| |||||||| ||||||||||  ||   |||||||||| |||||||||||    
T  7918720 aacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 5231874 - 5231842
Alignment:
Q  70 ttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||| |||||    
T  5231874 ttatgacatgtccatgagctgttttcatcttat 5231842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 8558751 - 8558719
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccat 84  Q
    |||||||||||||||||||| ||||||||||||    
T  8558751 agagcttatggaaacaacttgtgacatgtccat 8558719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 9540975 - 9541007
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccat 84  Q
    |||||||||||||||| ||||||||||||||||    
T  9540975 agagcttatggaaacatcttatgacatgtccat 9541007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 11118976 - 11119020
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||||| || ||||||||||||| ||| |||||||||||    
T  11118976 agagcttatggagactacttatgacatgttcataagctgttttca 11119020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 13000377 - 13000453
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| || ||||||||||  ||  ||||| |||||| ||||||||||||||||||||  || |||||||| |||||    
T  13000377 cataagcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccacaagttgttttcagcttat 13000453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 25869251 - 25869295
Alignment:
Q  58 tatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| |||||||||||||||||| || |||||||| |||||    
T  25869251 tatggaaataacttatgacatgtccataagttgttttcagcttat 25869295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 29262858 - 29262898
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaa 97  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  29262858 ttatggaaacaacttatgacatgttcataagctattttcaa 29262898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 30191120 - 30191148
Alignment:
Q  52 agagcttatggaaacaacttatgacatgt 80  Q
    |||||||||||||||||||||||||||||    
T  30191120 agagcttatggaaacaacttatgacatgt 30191148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 37740406 - 37740438
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccat 84  Q
    |||| ||||||||||||||||||||||||||||    
T  37740406 agagtttatggaaacaacttatgacatgtccat 37740438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 40071840 - 40071812
Alignment:
Q  52 agagcttatggaaacaacttatgacatgt 80  Q
    |||||||||||||||||||||||||||||    
T  40071840 agagcttatggaaacaacttatgacatgt 40071812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 1810102 - 1810025
Alignment:
Q  18 tctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttc 95  Q
    ||||||||||||| || ||||||||||  || | |||||||| ||||||||||||||||||||||||||| |||||||    
T  1810102 tctactaacataatcacttgtgagactatttgagagagcttacggaaacaacttatgacatgtccatgagttgttttc 1810025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 37273225 - 37273175
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccataagttgttttcaacttat 37273175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 37155127 - 37155042
Alignment:
Q  17 atctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| ||||||||||||||||||||  |  |||||| ||||||||| ||||||| |||||||||| || ||||||| ||||||    
T  37155127 atctacttacataaacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataagttgttttctacttat 37155042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 37200482 - 37200397
Alignment:
Q  17 atctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| ||||||||||||||||||||  |  |||||| ||||||||| ||||||| |||||||||| || ||||||| ||||||    
T  37200482 atctacttacataaacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataagttgttttctacttat 37200397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 49465915 - 49465965
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  49465915 agagcttatagaaacaacttatgacatgtccatgaactattttcaacttat 49465965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 24624343 - 24624251
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||| |||| | || |||| |||||  ||  ||||||||||| ||||| |||||||||||||||| | ||||||||| |||||    
T  24624343 tgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttat 24624251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 29771971 - 29771879
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| ||| ||||||| | | ||||||||  |||  ||||||||  ||||||||||| ||||||||||| || ||||||||||||||    
T  29771971 tgaacttatcaactgacataaatactcgtgagactatttatgagagcttaaagaaacaacttaggacatgtccataagttgttttcaacttat 29771879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 11039301 - 11039368
Alignment:
Q  35 ttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||  || ||||||||||||||||||  ||||||||||||||| || |||||||| |||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttat 11039368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 20192585 - 20192632
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaact 99  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  20192585 agagcttatagaaacagcttatgacatgtccataagctgttttcaact 20192632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 31010491 - 31010444
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  31010491 agcttatagaaacaacttatgacatgtccataagctgttttcagctta 31010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 3015822 - 3015872
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| |||||||||||||||||||||| || |||||||| |||||    
T  3015822 agagcttatgaaaacaacttatgacatgtccataagatgttttcatcttat 3015872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 13804856 - 13804818
Alignment:
Q  64 aacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  13804856 aacaacttatgacatgtccataagctgttttcaacttat 13804818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 36646361 - 36646411
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||| |||||    
T  36646361 agagcttatggaaaccacttatggcatgtccataagctgttttcatcttat 36646411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 41724299 - 41724253
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||    
T  41724299 cttatggaaacaacttatgacatgtccataagttgttttcagcttat 41724253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 49772616 - 49772689
Alignment:
Q  21 actaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||| |||||||| | ||||||||  |||  |||||||||||||||||||||||| |||||||| |||| ||||    
T  49772616 actagcataaacactagtgagactgtttaggagagcttatggaaacaacttatgagatgtccataagctttttt 49772689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 3044248 - 3044288
Alignment:
Q  62 gaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  3044248 gaaacaacttatgacatgttcataagctgttttcaacttat 3044288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 27290879 - 27290930
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| ||||| ||||||||||| |||| ||||||||||| |||||    
T  27290879 aagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttat 27290930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 30923853 - 30923927
Alignment:
Q  27 ataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| ||||||||||  |||  |||||| ||||||||| ||||||||||||| || ||||||||||| |||||    
T  30923853 ataaacacttgtgagactgtttatgagagct-atggaaacagcttatgacatgtctataagctgttttcagcttat 30923927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 31710868 - 31710915
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    |||||||  ||||||||||||||||| |||||||||||||||| ||||    
T  31710868 agcttataaaaacaacttatgacatgcccatgagctgttttcagctta 31710915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 31711123 - 31711170
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    |||||||  ||||||||||||||||| |||||||||||||||| ||||    
T  31711123 agcttataaaaacaacttatgacatgcccatgagctgttttcagctta 31711170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 42537130 - 42537087
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    ||||||||||||||||||||| |||||||||  |||||||||||    
T  42537130 gagcttatggaaacaacttattacatgtccacaagctgttttca 42537087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 42817201 - 42817252
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttata 103  Q
    |||||||||||||||| | |||||||||||||| || |||||||| ||||||    
T  42817201 agagcttatggaaacagcatatgacatgtccataagttgttttcagcttata 42817252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 43115148 - 43115097
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| |||||||||||||||||||||||||||| |  |||||||| |||||    
T  43115148 aagagtttatggaaacaacttatgacatgtccataacttgttttcagcttat 43115097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 1217778 - 1217828
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    ||||||||| ||||||| |||||||||||||||| || |||||||| ||||    
T  1217778 aagagcttacggaaacagcttatgacatgtccataagttgttttcatctta 1217828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 5391966 - 5391920
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| ||||| |||||||||||| ||| |||||||||||||||||    
T  5391966 cttatgaaaacagcttatgacatgttcataagctgttttcaacttat 5391920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 48588790 - 48588720
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgt 80  Q
    ||||||||| |||| | | |||||||||||||| | ||| | |||||||||  ||||||||||||||||||    
T  48588790 tgaacttatttacttatacaaacatttgtgagattgcttgagagagcttatataaacaacttatgacatgt 48588720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 50004739 - 50004693
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||| | | ||||||||||| |||||    
T  50004739 cttatggaaacaacttatgacatgttcttaagctgttttcagcttat 50004693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 52323873 - 52323923
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| |||| || |||||||| |||||| |||||||||||||||||    
T  52323873 agagcttattgaaataatttatgacacgtccataagctgttttcaacttat 52323923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 14598537 - 14598582
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| |||||||||||||||||| || ||||| ||||||||    
T  14598537 ttatggaaataacttatgacatgtccataagttgtttccaacttat 14598582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 24281138 - 24281089
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    |||||||||| ||||||||||||| || ||||| || |||||||||||||    
T  24281138 agagcttatgaaaacaacttatgatatctccataagttgttttcaactta 24281089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 26330265 - 26330330
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgt 80  Q
    ||||||||| | ||||  ||||||||||||  ||| ||||||||||| ||||||||| ||||||||    
T  26330265 ttatctactgaaataagtatttgtgagactgtttagaagagcttatgaaaacaacttctgacatgt 26330330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 30750080 - 30750047
Alignment:
Q  63 aaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||||||||||||||| |||||||||||    
T  30750080 aaacaacttatgacatgtccataagctgttttca 30750047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 45541687 - 45541618
Alignment:
Q  27 ataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    ||||||| |||| |||||  ||| |||| |||||| ||||| |||||||||||| ||| |||||||||||    
T  45541687 ataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgttttca 45541618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 48048962 - 48049011
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| || ||||| ||||||||||||| ||||||||||| |||||    
T  48048962 gagcttatgaaaccaactcatgacatgtccataagctgttttcagcttat 48049011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 2304208 - 2304292
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||||| |||||||| |||||||| |||||| |||  || | |||  ||||| || ||||||||||||||| ||| |||||||||    
T  2304208 tgaactgatctactagcataaacacttgtgaaactatttgagagaaattatgaaagcaacttatgacatgttcataagctgtttt 2304292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 34707486 - 34707526
Alignment:
Q  63 aaacaacttatgacatgtccatgagctgttttcaacttata 103  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  34707486 aaacaacttgtgacatgtccataagttgttttcaacttata 34707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 17259346 - 17259268
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtt 92  Q
    ||||||||||||||||| || ||||||||||| || |  |||||| |||||||||||| ||||||| ||||||||||||    
T  17259346 cttatctactaacataagcacttgtgagacttgttgagtgagcttttggaaacaacttttgacatgaccatgagctgtt 17259268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 11457212 - 11457148
Alignment:
Q  29 aaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttt 93  Q
    ||||| ||||||||||  ||  |||||||||||||||||||||||||||||||||| ||||||||    
T  11457212 aaacacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataagctgttt 11457148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 18700480 - 18700431
Alignment:
Q  47 ttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||||    
T  18700480 ttaaaagagcttatggaaacaacttatgacatgtctataagttgttttca 18700431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 11297149 - 11297225
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| |||| |||||  || ||||||||||||||||||||||| |||||||| || |||| |||||| |||||    
T  11297149 cataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgtcaattagctattttcagcttat 11297225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 11700357 - 11700401
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  11700357 agagtttatggaaacaacttatgacatgtccataagctgttttca 11700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 25705596 - 25705688
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||| || ||||||||    |||   |||||||  |||||||||| ||||||||| || |||||||||||||||||    
T  25705596 tgaacttatctactaacataagcacttgtgagatcatttaggtgagcttacagaaacaacttgtgacatgtctataagctgttttcaacttat 25705688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 32172744 - 32172694
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||||||||| |||  |||||| |||||    
T  32172744 agagcttatggaaacaacttatgacatgtccataagccattttcagcttat 32172694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 38047858 - 38047895
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagct 89  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  38047858 agagcttatggaaacaacttatgacatgtccataagct 38047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 40499705 - 40499742
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagct 89  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  40499705 agagcttatggaaacaacttatgacatgtccataagct 40499742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 2092524 - 2092572
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaactt 100  Q
    ||||||||| ||||||||||||| ||||||||| || ||||||||||||    
T  2092524 agagcttattgaaacaacttatggcatgtccataagttgttttcaactt 2092572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 7674757 - 7674689
Alignment:
Q  34 tttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| |||  |||| |||||||||||||||||||||||||  || || |||||||| |||||    
T  7674757 tttgtgagactgcttggaagaacttatggaaacaacttatgacatgtttataaggtgttttcagcttat 7674689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 18286919 - 18286859
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatga 75  Q
    ||||||||||| |||| |||||| |||||   |||||||||||||| ||||||||||||||    
T  18286919 ttatctactaatataagcatttgcgagaccgtttaaaagagcttattgaaacaacttatga 18286859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 34117526 - 34117570
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||||| ||||||||||||||| |||| |||||||||||    
T  34117526 agagcttatggagacaacttatgacatgcccataagctgttttca 34117570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 21768179 - 21768226
Alignment:
Q  55 gcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  21768179 gcttatgaaaacagcttatgacatgtccatacgctgttttcaacttat 21768226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 38766523 - 38766574
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| |||||||||||||||||||||| |||||| || ||||||| ||||||    
T  38766523 aagaacttatggaaacaacttatgacacgtccataagttgttttcgacttat 38766574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 41957429 - 41957480
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| ||||||| |||||||||||||||| || |||||||| |||||    
T  41957429 aagagcttacggaaacagcttatgacatgtccataagttgttttcatcttat 41957480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 13604828 - 13604878
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| ||||| ||||||||||||||||  | ||||||||||||||    
T  13604828 agagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttat 13604878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 10907491 - 10907426
Alignment:
Q  30 aacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttc 95  Q
    |||| ||||||||||  ||  ||||||||||| |||||||||||| |||||| || ||||||||||    
T  10907491 aacacttgtgagactgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttc 10907426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 36542266 - 36542311
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| |||||||||||||||  ||||||||| |||||||    
T  36542266 ttatggaaacatcttatgacatgtccagaagctgtttttaacttat 36542311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 40159946 - 40159881
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgt 80  Q
    ||||||||| |||||||||| ||||| |||  || ||||||||||   ||||||||||||||||||    
T  40159946 ttatctacttacataaacatgtgtgatactgtttgaaagagcttagaaaaacaacttatgacatgt 40159881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 4273330 - 4273406
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||| |  || | ||| | |||||||||| |||||||| |||| || || ||||||||||||||    
T  4273330 cataaacatttgtgagattgtttgagagaacctatggaaacagcttatgacttgtctataagttgttttcaacttat 4273406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 8090069 - 8089977
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||| || || | | ||||||  || | |||||||||| ||||||||||||| || | | | ||||||||||| |||||    
T  8090069 tgaacttatctactaacacaagcactcgcgagactatttgagagagcttatgaaaacaacttatgatatattcctaagctgttttcagcttat 8089977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 10152425 - 10152393
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccat 84  Q
    |||||||||| ||||||||||||||||||||||    
T  10152425 agagcttatgaaaacaacttatgacatgtccat 10152393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 27105888 - 27105976
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaa-cttatgacatgtccatgagctgttttcaa 97  Q
    |||||||||||| ||||||||||  |||| |||| | || | |||||||||||||| || ||||||| |||| ||| || |||||||||    
T  27105888 tgaacttatctattaacataaactattgttagacgttttgagagagcttatggaaaaaagcttatgatatgttcataagttgttttcaa 27105976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 29363099 - 29363055
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| ||||||||||||||||| |||| || ||||||||    
T  29363099 agagcttatgaaaacaacttatgacatgcccataagttgttttca 29363055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 29590610 - 29590658
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| | |||||||||| ||||||| || ||||||||||||||    
T  29590610 agcttatggacaaaacttatgacttgtccataagttgttttcaacttat 29590658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 34205332 - 34205288
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    ||||||||||||||||||||||| ||||| ||| || ||||||||    
T  34205332 agagcttatggaaacaacttatgtcatgttcataagttgttttca 34205288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 37611194 - 37611238
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  37611194 agagcttatgaaaacaacttgtgacatgttcataagctgttttca 37611238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 37787924 - 37787968
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  37787924 agagcttatgaaaacaacttgtgacatgttcataagctgttttca 37787968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 37794679 - 37794719
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||||||| |||||||||||||||||| ||| |||||||||    
T  37794679 agcttatgaaaacaacttatgacatgttcataagctgtttt 37794719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 2996706 - 2996614
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| || | |||||| || || |||||||  || | |||||||||| |||||||||||||||||||||| |||| ||||||||||||    
T  2996706 tgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttat 2996614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 11264428 - 11264342
Alignment:
Q  16 tatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| ||||||||| |||||||||  ||   ||||| ||| ||| ||||||||||||||||||| | |||||||||||||||    
T  11264428 tatctactagcataaacatctgtgagactgtttgggagagcatatagaatcaacttatgacatgtccataaactgttttcaacttat 11264342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 6987683 - 6987770
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| |||||   |||||||||||  ||   |||||||||||| |||||||||||||||||||| | || ||||||||||||    
T  6987683 ttatctactagcataagtgtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttat 6987770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 27123314 - 27123381
Alignment:
Q  35 ttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||  || | ||||||||||||||||||||||||||||||  | || ||||||||||||||    
T  27123314 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttat 27123381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 41097235 - 41097285
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| ||||||||| ||||||||||||| |||| ||||||||||||    
T  41097235 agagcttatagaaacaactaatgacatgtccataagctattttcaacttat 41097285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 45128289 - 45128339
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||| |||||    
T  45128289 agagcttatggaaacaactgatatcatgtccatgagctgttttcagcttat 45128339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 1966031 - 1965982
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  1966031 gagcttatgaaaacaacttatgacatgttcataagctgtttttaacttat 1965982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 28614786 - 28614837
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||| |||||    
T  28614786 aagagcttatggaaacaatttatgacatatccataagctcttttcagcttat 28614837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 10812599 - 10812549
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||| |||||    
T  10812599 agagcttatggaaacaacttttgtcatgtacatgaactgttttcagcttat 10812549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 20656128 - 20656078
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| ||| ||||||||||||||||||||| || ||| ||||||||||    
T  20656128 agagcttctggcaacaacttatgacatgtccataagttgtcttcaacttat 20656078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 21953039 - 21952997
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||||||||||||| |||||||||||||||||| | |||||||    
T  21953039 agagcttatggaaagaacttatgacatgtccataacctgtttt 21952997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 28749883 - 28749933
Alignment:
Q  49 aaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaact 99  Q
    |||| |||||||||||| ||||||| |||||||||| | ||||||||||||    
T  28749883 aaaatagcttatggaaataacttattacatgtccataaactgttttcaact 28749933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 7730691 - 7730654
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagct 89  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  7730691 agagcttaaggaaacaacttatgacatgtccataagct 7730654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 7749070 - 7749099
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtc 81  Q
    ||||||||||||||||||||||||||||||    
T  7749070 agagcttatggaaacaacttatgacatgtc 7749099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 18628494 - 18628555
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatga 75  Q
    |||||||||| ||||||||| ||||||||||  ||   |||||||||| |||||||||||||    
T  18628494 cttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 25583720 - 25583639
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||| || |||||||||| |||||||||  ||   || ||||||| |||||||||||||||||||||  || ||||||||    
T  25583720 ttatcttctgacataaacatgtgtgagactgtttgggagcgcttatgcaaacaacttatgacatgtccaaaagttgttttca 25583639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 25793048 - 25793117
Alignment:
Q  33 atttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| ||| | ||| |||||| |||||||||||  |||||||| |||||| |||| ||||||||||||    
T  25793048 atttgttagattgctttaaagaggttatggaaacaggttatgacacgtccataagctattttcaacttat 25793117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 27725305 - 27725260
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaa 97  Q
    |||||||||||||| |||||||||||||||||| | || |||||||    
T  27725305 agagcttatggaaataacttatgacatgtccataaactattttcaa 27725260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 32071954 - 32071917
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  32071954 ttatggaaacaacttatgacacgtccataagctgtttt 32071917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 2874607 - 2874635
Alignment:
Q  56 cttatggaaacaacttatgacatgtccat 84  Q
    |||||||||||||||||||||||||||||    
T  2874607 cttatggaaacaacttatgacatgtccat 2874635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 4243653 - 4243625
Alignment:
Q  56 cttatggaaacaacttatgacatgtccat 84  Q
    |||||||||||||||||||||||||||||    
T  4243653 cttatggaaacaacttatgacatgtccat 4243625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 19250623 - 19250587
Alignment:
Q  66 caacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  19250623 caacttatgacatgtccataagctgatttcaacttat 19250587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 25717685 - 25717653
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtcca 83  Q
    |||||||||||||||||||||||||| ||||||    
T  25717685 aagagcttatggaaacaacttatgacttgtcca 25717653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 27721830 - 27721758
Alignment:
Q  30 aacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| |||||||| |  |||| |||||||||  |||| ||||||||||| ||||| ||||||||||| |||||    
T  27721830 aacacttgtgagattgtttaagagagcttataaaaactacttatgacatatccataagctgttttcagcttat 27721758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 27970149 - 27970105
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||| ||||| ||||||||||||||||||| || |||||||||||    
T  27970149 agagtttatgaaaacaacttatgacatgtctataagctgttttca 27970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 29376036 - 29375944
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||| | |||||| || ||||||  ||  || | |||||||||||||||| ||||||||| ||||||    ||||||||||||||    
T  29376036 tgaacttatctattgacataagcacttgtgacgctatttcagagagcttatggaaacagcttatgacaggtccatattttgttttcaacttat 29375944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 29467605 - 29467653
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| |||||  |||||||||||||||| ||||||||||| |||||    
T  29467605 agcttatagaaacggcttatgacatgtccataagctgttttcagcttat 29467653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 46175658 - 46175698
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||||||||||||||||| ||||| ||| |||||    
T  46175658 agcttatggaaacaacttatgacatctccataagccgtttt 46175698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 55870284 - 55870372
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttata 103  Q
    ||||||| | ||||||||||||||||||||  || | | |||||||| ||| |  ||||||| ||||||| ||||||||| || |||||    
T  55870284 ttatctaatgacataaacatttgtgagactctttgagatagcttatgaaaaaagtttatgacctgtccataagctgttttaaaattata 55870372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 15120316 - 15120232
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||||||| |||||||| ||||||  ||  ||   ||||||||||||||||||||||||||||| ||| |||||||||    
T  15120316 tgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctgtttt 15120232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 34652017 - 34652065
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  34652017 agcttatagaaacaacttatgacatgtccataagctgttttcaacttat 34652065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 43456644 - 43456736
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| |||| ||||||||| |||| |||||  || ||||||||| || |||||||| ||||||||||||| | ||||||||| |||||    
T  43456644 tgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcagcttat 43456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 9878660 - 9878711
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  9878660 aagagcttatggaaacaacttatgacatgtccataagttgttttcgacttat 9878711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 10285949 - 10285901
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  10285949 agcttatgaaaataacttatgacatgtccataagctgttttcaacttat 10285901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 11344753 - 11344797
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaactt 100  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  11344753 cttatggaaacaacttatgacatgtccataaactgttttcaactt 11344797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 9478432 - 9478341
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    ||||||||||||| |||||||  | ||||| ||||  || | |||| ||||| ||||||||||| |||||||||| ||||||||||| ||||    
T  9478432 tgaacttatctaccaacataagtacttgtgtgactgtttgagagagtttatgcaaacaacttattacatgtccataagctgttttcatctta 9478341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 25609925 - 25609862
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgaca 77  Q
    |||||||||||||||||  | |||||||||| |||  || ||||||||||||||||||||||||    
T  25609925 cttatctactaacataagaacttgtgagactgcttggaatagcttatggaaacaacttatgaca 25609862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 1742011 - 1742061
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||||| ||| |||| | ||||||||||    
T  1742011 agagcttatggaaacaacttatgacatgtgcataagctatcttcaacttat 1742061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 1939323 - 1939361
Alignment:
Q  64 aacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttat 1939361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 32821938 - 32821856
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    ||||||||| ||| ||| ||||||  |||||  ||  ||||| |||| ||||||||||||||||||||||| |||||||||||    
T  32821938 cttatctaccaacgtaagcatttgcaagactgtttggaagagtttatagaaacaacttatgacatgtccataagctgttttca 32821856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 30538153 - 30538202
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| ||||||||||||||||||||||| || |||||||| |||||    
T  30538153 gagcttatagaaacaacttatgacatgtccataagttgttttcagcttat 30538202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 41042006 - 41042051
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  41042006 ttatagaaacaacttattacatgtccatcagctgttttcaacttat 41042051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 43985337 - 43985252
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactt 100  Q
    ||||||||| ||||||||| |||| | |||  || | |||| |||  ||||||||||||||||||||||| |||| ||||||||||    
T  43985337 ttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagcttttttcaactt 43985252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 550587 - 550543
Alignment:
Q  58 tatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||    
T  550587 tatggaaacaaattatgacatgttgatgagctgttttcaacttat 550543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 41809198 - 41809266
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||||||| ||||||||||  ||  |||||||| ||||||||||||||||||||| ||| || ||||||    
T  41809198 cataaacacttgtgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttt 41809266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 28933915 - 28933865
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| |||||||||||| ||||| ||| |||||||||||||||||    
T  28933915 aagagcttatgaaaacaacttatggcatgttcat-agctgttttcaacttat 28933865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 787419 - 787373
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| ||||| |||||||||||||||| ||||||||||| |||||    
T  787419 cttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 4550838 - 4550796
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  4550838 agagcttatggaaacaacttatgacatgttcataagctatttt 4550796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 7283114 - 7283036
Alignment:
Q  25 acataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttata 103  Q
    ||||||||| ||||||||||  ||  |  ||||| |||||||||||||||| |||||||| || |||||||| ||||||    
T  7283114 acataaacacttgtgagactatttggattagcttttggaaacaacttatgatatgtccataagttgttttcatcttata 7283036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 8820235 - 8820321
Alignment:
Q  16 tatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| |||| || ||  |||||| ||||| ||| |||||||||||| ||| |||||||| ||  ||||||||||| |||||    
T  8820235 tatctactaatataagcactttcgagactgcttaagagaccttatggaaacagcttctgacatgttcacaagctgttttcagcttat 8820321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 10285446 - 10285396
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| ||||| |||| ||||||||||||||| ||||||||||| |||||    
T  10285446 agagctaatggagacaagttatgacatgtccataagctgttttcagcttat 10285396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 12215896 - 12215854
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||||| | |||||||||||||||| |||||||||||    
T  12215896 agcttatggaaatagcttatgacatgtccataagctgttttca 12215854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 14316124 - 14316174
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||| |  || ||||||||||| |||||    
T  14316124 agagcttatggaaacaacttatgacatatgtataagctgttttcagcttat 14316174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 43065429 - 43065479
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| |||||||||||||||||||||| |  |||||||| |||||    
T  43065429 agagcttatgaaaacaacttatgacatgtccataaattgttttcagcttat 43065479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 6561431 - 6561402
Alignment:
Q  49 aaaagagcttatggaaacaacttatgacat 78  Q
    ||||||||||||||||||||||||||||||    
T  6561431 aaaagagcttatggaaacaacttatgacat 6561402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 44606088 - 44606133
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||| |||||| |||||||||||||||||||||| || ||||||||    
T  44606088 aagaacttatgaaaacaacttatgacatgtccataagttgttttca 44606133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 1830136 - 1830104
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccat 84  Q
    |||||||||||||||| ||||||||||||||||    
T  1830136 agagcttatggaaacatcttatgacatgtccat 1830104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 11063326 - 11063266
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaact 70  Q
    |||||||||||||||||| || |||||| ||||||  ||  |||||||||||||| |||||    
T  11063326 tgaacttatctactaacacaagcatttgcgagactattttgaagagcttatggaagcaact 11063266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 17380698 - 17380615
Alignment:
Q  12 aacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| |||||| |||| |||||| ||| |||   ||| |||||| ||||||||| ||||||||| || |||||||||||    
T  17380698 aacttatctattaacatgaacacttgtgatact-cttgggagatcttatgtaaacaacttgtgacatgtcaataagctgttttca 17380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 18884958 - 18884914
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    ||||||||| |||||| |||||||||| ||||| |||||||||||    
T  18884958 agagcttatagaaacagcttatgacatttccattagctgttttca 18884914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 29430887 - 29430811
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctg 90  Q
    |||||||||| ||||||||| ||||| ||||  ||  |||| |||||| ||| | |||||||||||||||| |||||    
T  29430887 cttatctactgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacatgtccattagctg 29430811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 29936083 - 29936043
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatgagctgttt 93  Q
    |||||||||||||||||||| ||||||||||| || |||||    
T  29936083 gagcttatggaaacaacttaagacatgtccataagttgttt 29936043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 37186295 - 37186339
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||| |||| ||||||||||||||||||||  |||||||||||||    
T  37186295 agagattatagaaacaacttatgacatgtctgtgagctgttttca 37186339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 32515383 - 32515471
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttata 103  Q
    |||||||||||||||| || ||||||||||  ||   |||||||||||||||| | ||||||||||| || || |||||||||||||||    
T  32515383 ttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttata 32515471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 33723319 - 33723411
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||| |||||||| |||||||||| |||   | | |||||||||||| || ||||||||| |||||| |||||||| |||||    
T  33723319 tgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatgttttcagcttat 33723411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 17628689 - 17628646
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  17628689 gagcttatggaaacaacttatgacatgtccataagctgttttca 17628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 6262139 - 6262061
Alignment:
Q  24 aacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| ||||| ||||||||||  ||| |||||||||||  ||||||||||||||||| ||| |||| ||||||||||||    
T  6262139 aacaaaaacacttgtgagactgtttacaagagcttatgagaacaacttatgacatgttcataagctattttcaacttat 6262061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 15581383 - 15581301
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| |||||| || |||||||| |  ||  ||||||| ||||||||||||||||||||||| || |||||||||||    
T  15581383 cttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttca 15581301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 42336702 - 42336588
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttataagaaaacattttcactttatttttgtattttgttaaagaaataatgtataca 155  Q
    |||||| |||||||||||||||||||||  || ||||||| ||||||| |||||    || |||||| |||| | |||||||| | ||||||  ||||||    
T  42336702 cttatgaaaacaacttatgacatgtccaaaagttgttttcgacttatatgaaaattgcttgacttta-ttttattttttgttataaaaataacctataca 42336604  T
Q  156 taaacactaatatgat 171  Q
    ||| ||||||||||||    
T  42336603 taagcactaatatgat 42336588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 24153372 - 24153322
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| ||||||||||||||||| |||||||| |||||| |||||||    
T  24153372 agagcttatagaaacaacttatgacatatccatgagttgtttttaacttat 24153322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 34380568 - 34380486
Alignment:
Q  20 tactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| ||| ||||||||||||||||  || | |||||||| |||||||  ||||||||| ||||| ||||||||||| |||||    
T  34380568 tactgacacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttat 34380486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 17631081 - 17631118
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagct 89  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  17631081 agagcttatggaaacaacttatgacatgtccataagct 17631118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 11695946 - 11695902
Alignment:
Q  58 tatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||    
T  11695946 tatggaaacagtttatgacatgtccataagctgttttcaacttat 11695902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 17420320 - 17420244
Alignment:
Q  26 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| |||| |||||  ||  ||||||||||| ||||||||||| |||||||||| |  ||||||||||||||    
T  17420320 cataaacacttgttagactgttttgaagagcttatgaaaacaacttattacatgtccataaattgttttcaacttat 17420244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 27146215 - 27146283
Alignment:
Q  34 tttgtgagacttcttaaaagagcttatggaaacaacttatgaca-tgtccatgagctgttttcaactta 101  Q
    |||||||||||| ||  |||| |||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  27146215 tttgtgagacttgttggaagaacttaaggaaacaacttatgacattgttcataagctgttttcaactta 27146283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 29723582 - 29723530
Alignment:
Q  50 aaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||| || ||||||||| |||||||||||||||| | |||||||||||||||    
T  29723582 aaagaactaatggaaacagcttatgacatgtccataaactgttttcaacttat 29723530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 43420387 - 43420299
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||  ||||||||| |||||||||| |||   ||| |||||||||||| |||||||||||| ||| | | | |||||||||||    
T  43420387 cttatctacagacataaacacttgtgagactgcttgtgagatcttatggaaacagcttatgacatgttcataatccgctttcaacttat 43420299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 6231758 - 6231845
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| ||||||||||||||||| |  |    | |||| |||||||||||| ||||||||||||| | ||||||||| |||||    
T  6231758 ttatctactagcataaacatttgtgagattgttctggatagctcatggaaacaactaatgacatgtccataaactgttttcagcttat 6231845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 11639394 - 11639437
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||    
T  11639394 aagagcttatgaaaacagcttatgacatgtccataagctgtttt 11639437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 27140614 - 27140519
Alignment:
Q  7 atatgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| |||||||| | ||||||||| |||| || ||  || | |||| ||| ||||||| |||||||||||||||| || |||||||| |||||    
T  27140614 atatgagcttatctattgacataaacaattgtaagtctctttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcagcttat 27140519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 35350722 - 35350687
Alignment:
Q  61 ggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||||||||||||||||| |||||||||||    
T  35350722 ggaaacaacttatgacatgtccataagctgttttca 35350687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 45327670 - 45327639
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccat 84  Q
    ||||||||||||||||||||||||||||||||    
T  45327670 gagcttatggaaacaacttatgacatgtccat 45327639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 6977015 - 6976973
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||||| |||||||||||||||||||||| ||| |||||||||    
T  6977015 agagctaatggaaacaacttatgacatgttcataagctgtttt 6976973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 14128408 - 14128442
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagact 44  Q
    ||||||||||||||| |||||||||||||||||||    
T  14128408 tgaacttatctactagcataaacatttgtgagact 14128442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 15579573 - 15579523
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||| ||||||||||||||||||||||||| || |||| ||| |||||    
T  15579573 agagcttgtggaaacaacttatgacatgtccataagttgttctcagcttat 15579523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 19412576 - 19412614
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctg 90  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  19412576 agagtttatggaaacaacttatgacatgtccataagctg 19412614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 35925777 - 35925731
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| ||||| |||||||||||| ||| |||||||||||||||||    
T  35925777 cttatgaaaacagcttatgacatgttcataagctgttttcaacttat 35925731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 37175887 - 37175929
Alignment:
Q  36 tgtgagacttcttaaaagagcttatggaaacaacttatgacat 78  Q
    |||||||||  ||| ||||||||||||||||||||||||||||    
T  37175887 tgtgagactgtttagaagagcttatggaaacaacttatgacat 37175929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 39270404 - 39270454
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| ||||| ||| || ||||||||| |||||||||||||||||    
T  39270404 agagcttatgaaaacagcttttggcatgtccataagctgttttcaacttat 39270454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 83
Target Start/End: Original strand, 12518961 - 12518990
Alignment:
Q  54 agcttatggaaacaacttatgacatgtcca 83  Q
    ||||||||||||||||||||||||||||||    
T  12518961 agcttatggaaacaacttatgacatgtcca 12518990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 27146013 - 27145980
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccat 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  27146013 aagagcttatggaaacagcttatgacatgtccat 27145980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 1662664 - 1662632
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccat 84  Q
    |||||||| ||||||||||||||||||||||||    
T  1662664 agagcttacggaaacaacttatgacatgtccat 1662632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 4868481 - 4868441
Alignment:
Q  62 gaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  4868481 gaaacaacttatgacatgtcaataagttgttttcaacttat 4868441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 11560541 - 11560573
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccat 84  Q
    ||||||||||||||||||||||||||| |||||    
T  11560541 agagcttatggaaacaacttatgacatatccat 11560573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 16980936 - 16980868
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacat 78  Q
    ||||||||| ||| |||||||  | ||||||||||  || | ||||||||||||||||||||| |||||    
T  16980936 tgaacttatataccaacataagtacttgtgagactatttgagagagcttatggaaacaacttacgacat 16980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 26179562 - 26179518
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||| ||| |||||||||||||||||||| |||||| ||||||||    
T  26179562 agagtttaaggaaacaacttatgacatgtgcatgagttgttttca 26179518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 30259463 - 30259515
Alignment:
Q  50 aaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||| ||||||||||| |||||||| || |  ||||||||||||||    
T  30259463 aaagagcttatagaaacaacttacgacatgtcaataaattgttttcaacttat 30259515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 30418165 - 30418193
Alignment:
Q  56 cttatggaaacaacttatgacatgtccat 84  Q
    |||||||||||||||||||||||||||||    
T  30418165 cttatggaaacaacttatgacatgtccat 30418193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 3738197 - 3738110
Alignment:
Q  15 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| ||||| |  ||||||||||  || ||||| ||| |||||||| |||||||||||||||| ||||| |||||||||||    
T  3738197 ttatctactagcataagcccttgtgagactgtttgaaagatcttgtggaaacagcttatgacatgtccataagctgctttcaacttat 3738110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 32577965 - 32578015
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| |||||    
T  32577965 agagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttat 32578015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 4246500 - 4246451
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  4246500 gagcttttggaaacaactcatgacatgtccataagctgttttcaacttat 4246451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 9667973 - 9668014
Alignment:
Q  61 ggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  9667973 ggaaacaacttatgacatgtccataagctgttttcaacttat 9668014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 9027671 - 9027619
Alignment:
Q  50 aaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||| |||||||||||||||||| || |||||||| |||||    
T  9027671 aaagagcttatggaaataacttatgacatgtccataagttgttttcagcttat 9027619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 32171600 - 32171508
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| |||| |||||| |||||||||||||  ||   |||||||| ||||||||||||||| |  ||||||| ||||||||| |||||    
T  32171600 tgaacttatttactgacataagcatttgtgagactggttgggagagcttaaggaaacaacttatgatacctccatgaactgttttcagcttat 32171508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 32917326 - 32917246
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgtttt 94  Q
    |||| ||||||  ||||||| ||||||||||  ||   ||||||||||||||||||||||||||||||||| |||| ||||    
T  32917326 cttacctactagaataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagctttttt 32917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 2455902 - 2455851
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||||||||||||||||||||| |||| | || ||||||||||||    
T  2455902 aagagcttatggaaacaacttatgacatgcccataaactattttcaacttat 2455851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 2460113 - 2460180
Alignment:
Q  35 ttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||||  || | ||||||||||||||||||||||||||||||  | || ||||||||||||||    
T  2460113 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttat 2460180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 7148757 - 7148707
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| |||||||||||||||| ||||||| |||| ||||||||||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttat 7148707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 32975967 - 32975859
Alignment:
Q  107 aaacattttcactttatttttgtattttgttaaagaaataatgtatacataaacactaatatgataggcactgacgacataatcgcgtaattaagttgtt 206  Q
    ||||| ||| ||||||||||  |||||||||| ||||||||  |||||||||||||| |||||| | || || | |  |||| ||| |||||||||||||    
T  32975967 aaacagtttgactttatttta-tattttgttacagaaataacttatacataaacacttatatgagaagcgcttatgctataaacgcttaattaagttgtt 32975869  T
Q  207 tatcgaaaca 216  Q
    |||| |||||    
T  32975868 tatctaaaca 32975859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 1669777 - 1669821
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| ||||||||||||||||||| || |||||||||||    
T  1669777 agagcttatgaaaacaacttatgacatgtctataagctgttttca 1669821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 2455731 - 2455683
Alignment:
Q  25 acataaacatttgtgagacttcttaaaagagcttatggaaacaacttat 73  Q
    |||||| |||||||||||||  || ||||||||||||||||||||||||    
T  2455731 acataagcatttgtgagactgtttgaaagagcttatggaaacaacttat 2455683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 33284332 - 33284284
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||| |||||||||||||||||| ||||| |||||||||||| ||||    
T  33284332 agcttagggaaacaacttatgacatttccataagctgttttcaaattat 33284284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 34939873 - 34939785
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| | |||||||||||||||| |||  ||   |||||||| ||||||| |||||||||||||||| |  |||||||| |||||    
T  34939873 cttatctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttat 34939785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 1575987 - 1575936
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| |||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  1575987 aagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttat 1575936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 2767714 - 2767769
Alignment:
Q  38 tgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttt 93  Q
    ||||||| ||||  ||||||| |||||||| |||||||||||||||| ||||||||    
T  2767714 tgagactgcttaggagagcttgtggaaacagcttatgacatgtccataagctgttt 2767769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 4420735 - 4420684
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||| ||||||| ||||||||||| ||| ||||||||||| |||||    
T  4420735 aagagcttatagaaacaaattatgacatgttcataagctgttttcagcttat 4420684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 30523746 - 30523703
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaact 99  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||    
T  30523746 cttatggaaacaacttatgccatgttcataagctgttttcaact 30523703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 31624182 - 31624131
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| |||||| ||||| |||||||||||| ||| |||||||||||||||||    
T  31624182 aagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttat 31624131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 34404631 - 34404600
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtcca 83  Q
    ||||||||||||||||||||||||||||||||    
T  34404631 agagcttatggaaacaacttatgacatgtcca 34404600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 769254 - 769180
Alignment:
Q  27 ataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    ||||||| ||||||||||  ||  | || |||||| ||||| |||||||||||| ||| ||||||||||||||||    
T  769254 ataaacacttgtgagactgtttggatgaacttatgaaaacatcttatgacatgttcataagctgttttcaactta 769180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 2034425 - 2034475
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||| ||||||||||| |||||||||| ||||| ||||||||||| |||||    
T  2034425 agagtttatggaaacagcttatgacatttccataagctgttttcagcttat 2034475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 3181006 - 3181076
Alignment:
Q  10 tgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgt 80  Q
    |||||||||||||  |||||| || ||||||||||  || |||||||| ||| ||||||||||||| ||||    
T  3181006 tgaacttatctacagacataagcacttgtgagactatttgaaagagctaatgtaaacaacttatgaaatgt 3181076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 82
Target Start/End: Original strand, 10616520 - 10616550
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtcc 82  Q
    |||||||||||||||||||||||||||||||    
T  10616520 agagcttatggaaacaacttatgacatgtcc 10616550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 34939604 - 34939554
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||||||||||||||||| |||| | || |||||||| |||||    
T  34939604 agagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttat 34939554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 3775080 - 3775157
Alignment:
Q  25 acataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    ||||||||| ||||||||||  |   |||||||||| |||||| |||||||||||| ||| | ||||||||| |||||    
T  3775080 acataaacacttgtgagactattcggaagagcttatagaaacagcttatgacatgtgcataaactgttttcagcttat 3775157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 30863337 - 30863288
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    |||||||||| |||||||||||||||||| ||| || |||||||| ||||    
T  30863337 agagcttatgaaaacaacttatgacatgtacataagttgttttcagctta 30863288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 30865612 - 30865547
Alignment:
Q  14 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatg 79  Q
    |||||||  ||||||||||| |||| ||||   |||| |||||||||||||| |||||||||||||    
T  30865612 cttatctgttaacataaacacttgttagacagtttaagagagcttatggaaataacttatgacatg 30865547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 31338067 - 31338030
Alignment:
Q  52 agagcttatggaaacaacttatgacatgtccatgagct 89  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  31338067 agagcttatgaaaacaacttatgacatgtccataagct 31338030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 32976070 - 32976025
Alignment:
Q  51 aagagcttatggaaacaacttatgacatgtccatgagctgttttca 96  Q
    |||||||||| |||||| |||||||||| ||||| |||||||||||    
T  32976070 aagagcttatagaaacagcttatgacatttccataagctgttttca 32976025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 3155268 - 3155216
Alignment:
Q  50 aaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||||||  | ||||||||||||||||| || ||||||||||| |||||    
T  3155268 aaagagcttatatacacaacttatgacatgtctataagctgttttcagcttat 3155216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 8147018 - 8147094
Alignment:
Q  25 acataaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    |||||| || |||| |||||  || |||||||||||| ||||||||||| |||| | ||| |||| |||||||||||    
T  8147018 acataaccacttgttagactgtttcaaagagcttatgaaaacaacttataacatatgcataagctattttcaactta 8147094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 10032667 - 10032635
Alignment:
Q  53 gagcttatggaaacaacttatgacatgtccatg 85  Q
    |||||||||||||||||||||||||||| ||||    
T  10032667 gagcttatggaaacaacttatgacatgttcatg 10032635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 27595551 - 27595591
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaa 97  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  27595551 ttatggaaacaacttatgacatgttcataagctattttcaa 27595591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 27615257 - 27615297
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaa 97  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  27615257 ttatggaaacaacttatgacatgttcataagctattttcaa 27615297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 27693423 - 27693463
Alignment:
Q  57 ttatggaaacaacttatgacatgtccatgagctgttttcaa 97  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  27693423 ttatggaaacaacttatgacatgttcataagctattttcaa 27693463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 12687 - 12732
Alignment:
Q  56 cttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||    
T  12687 cttatggaaacaacttatgacatgtccataagttgttttcagctta 12732  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 306414 - 306368
Alignment:
Q  55 gcttatggaaacaacttatgacatgtccatgagctgttttcaactta 101  Q
    ||||||||||||| ||||||||||| |||| ||||||||||| ||||    
T  306414 gcttatggaaacagcttatgacatgcccataagctgttttcagctta 306368  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 10598 - 10646
Alignment:
Q  54 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttat 102  Q
    |||||||| |||||||| ||||||||||||| || |||||||| |||||    
T  10598 agcttatgtaaacaactaatgacatgtccataagttgttttcagcttat 10646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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