View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_38 (Length: 330)
Name: NF5478_high_38
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 40369471 - 40369173
Alignment:
| Q |
14 |
accatatttcaaattcaggagtgttaatcatacttatggagctttaatgcacgtgatgggcattagtgattaaagtgggctattaatttgtgatcacatc |
113 |
Q |
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| T |
40369471 |
accatatttcgaattcag-agtgttaatcatacttatggagctttaatgcacgtgatgggcattagtgattaaagtgggctattaatttgtgatcacatc |
40369373 |
T |
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| Q |
114 |
tactcgtgtgggtctaccaacacttattactcacacaaatatcaatcacattcagaatcagaattcagaacataaactctcgttgatatcatccatcctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40369372 |
tactcgtgtgggtctaccaacacttattactcacacaaatatcaatcacattcagaatcagaattcagaacataaactctcgttgatatcatccatcctt |
40369273 |
T |
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| Q |
214 |
atttgtgtttgtgcgtgatccaccagtagccttcaactcaaaaatcatttaataaataaatgtccaccgcaactaatactatatgcccgtgctttccttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40369272 |
atttgtgtttgtgcgtgatccaccagtagccttcaactcaaaaatcatttaataaataaatgtccaccgcaactaatactatatgcccgtgctttccttt |
40369173 |
T |
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