View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5478_high_39 (Length: 329)
Name: NF5478_high_39
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_39 |
 | |
|
| [»] scaffold0147 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 1762346 - 1762030
Alignment:
| Q |
2 |
ttccattttcaacattagtatcatcactaacaataatagtagagaacataatattatatatgaaataaattaacctcgtatcataatatgataaagatta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762346 |
ttccattttcaacattagtatcatcactaacaataatagtagagaacataatattatatatgaaataaattaacctcgtatcataatatgataaagatta |
1762247 |
T |
|
| Q |
102 |
aacatacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762246 |
aacatacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctc |
1762147 |
T |
|
| Q |
202 |
ccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctgaaactccatctttttccaatttcgtctcccatg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762146 |
ccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctgaaactccatctttttccaatttcgtctcccatg |
1762047 |
T |
|
| Q |
302 |
atcttagcattatattc |
318 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1762046 |
atcttagcattatattc |
1762030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 317
Target Start/End: Complemental strand, 25196765 - 25196602
Alignment:
| Q |
157 |
tctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaa |
256 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||||||| | || ||| ||| ||| |||| |||| |
|
|
| T |
25196765 |
tctctaagctttgcgaatatttcttttccttcaacataattgctcccaaaacacactctagcaattatgtcagccgacaagcttcgcaaatcttcatcaa |
25196666 |
T |
|
| Q |
257 |
ctttaatctctgaa---actccatctttttccaatttcgtctcccatgatcttagcattatatt |
317 |
Q |
| |
|
|| ||||||||||| || |||||| ||| | ||| |||||||| ||||||| ||||||||| |
|
|
| T |
25196665 |
ctgtaatctctgaaatcaccccatctccttctattttagtctcccaagatcttaccattatatt |
25196602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 273
Target Start/End: Complemental strand, 19207257 - 19207088
Alignment:
| Q |
104 |
catacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctccc |
203 |
Q |
| |
|
||||||||||||| ||||||||| || | || ||| | | || ||| ||| ||||||||||||| || |||||| ||||||| |||||||||||||| |
|
|
| T |
19207257 |
catacctaaagcccggaattccaacatatatcttggagaggagttttataagatctctaagctttgtgaatatttcttttccttcgacataattgctccc |
19207158 |
T |
|
| Q |
204 |
aaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctgaaact |
273 |
Q |
| |
|
||||| | |||| |||||||||||| |||| ||| ||| || |||| ||||||||||||||||||||| |
|
|
| T |
19207157 |
aaaactaactctagcaattatgtcagctgacaagcttcgcagatcttcatcaactttaatctctgaaact |
19207088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 9527 - 9414
Alignment:
| Q |
160 |
ctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactt |
259 |
Q |
| |
|
|||||||||| || |||||| |||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||| ||| || |||| ||||| || |
|
|
| T |
9527 |
ctaagctttgtgaatatttcttttcctttgacataattgctcccaaaacaaactctagcaattatgtcagctgacaagcttcgcagatcttcgtcaattt |
9428 |
T |
|
| Q |
260 |
taatctctgaaact |
273 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
9427 |
ttatctctgaaact |
9414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University