View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_40 (Length: 323)
Name: NF5478_high_40
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 20209411 - 20209109
Alignment:
| Q |
7 |
tccaagaatatacaatatgatatatgattggcagcatgttttgttttgctaactcaaattcaagaaaatgcatgtatatatcctaataattattatacct |
106 |
Q |
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| T |
20209411 |
tccaataatatacaatctaatatatgattggcagcatgttttgttttgctaactcaaattcaagaaaatgcatgtatatatcctgataattgttatacct |
20209312 |
T |
|
| Q |
107 |
atagtcatcatcacaatgttacagatag-nnnnnnnnccttaaaaagaatttaactattcatttttgtcttttcggaaatagtgataaatgcccgttaaa |
205 |
Q |
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| T |
20209311 |
atagtcatcatcacaatgttacagctagtttttttttccttgaaaagaatttaactattcatttttgtcttttcggagatagtgataaatgtccgttaaa |
20209212 |
T |
|
| Q |
206 |
actcacacgaataactgtgaagtgttgtattcaaatctgaatgaagttgtccaatctaataatataaacattgtgctcagttttatggacaactattcat |
305 |
Q |
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|||||||||||||| |||||||||||||||||||| | ||||||| || ||||||| |||||||| |||||||| | |||||||||||||||||| | |
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| T |
20209211 |
actcacacgaataattgtgaagtgttgtattcaaacccaaatgaagaaatctaatctaacaatataaatattgtgctaaattttatggacaactattcgt |
20209112 |
T |
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| Q |
306 |
ttt |
308 |
Q |
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||| |
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| T |
20209111 |
ttt |
20209109 |
T |
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