View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_42 (Length: 316)
Name: NF5478_high_42
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 2879382 - 2879073
Alignment:
| Q |
7 |
atacaatcaggatgtagtgttattacctcagcttgatccgaaacattctcctgaggatcaactttaattttcactaaataccccgatttggtgagccgat |
106 |
Q |
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| T |
2879382 |
atacaaccaggatgtagtgttattacctcagcttgatccgaaacattctcctgaggatcaactttaattttcactaaataccccgacttggtgagccgat |
2879283 |
T |
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| Q |
107 |
aaatagaccctttaaaataaattgannnnnnnatccaatcagactcgtaaatgtattctggcaaactaatattcaatgtagtccaattaccagtcacgga |
206 |
Q |
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| T |
2879282 |
aaatagaccctttaaaataaattgatttttttatccaatcagactcgtaaatgtaatctggcaaactaatattcaatgtcgtccaattaccagtcacgga |
2879183 |
T |
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| Q |
207 |
ggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagggtcatatgcgagagcagcatatgaataccctcca |
306 |
Q |
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| T |
2879182 |
ggagaaaatgttcacatgacgaagaccctgaaaacgcacaatcttgaaaaaccaagattctgcagggtcatatgccagagcagcatatgaatacccacca |
2879083 |
T |
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| Q |
307 |
gaggtttgtc |
316 |
Q |
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| T |
2879082 |
gaggtttgtc |
2879073 |
T |
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 2089949 - 2090031
Alignment:
| Q |
4 |
aaaatacaatcaggatgtagtgttattacctcagcttgatccgaaacattctcctgaggatcaactttaattttcactaaata |
86 |
Q |
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| T |
2089949 |
aaaacacaatcaggatgaagtgttattatctcagcttgattcgaggcattctcttgaggatcaactttaattttcaataaata |
2090031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 2090153 - 2090246
Alignment:
| Q |
205 |
gaggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagggtcatatgcgagagcagcatatgaat |
298 |
Q |
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| T |
2090153 |
gaggagaaaatattaatatggccatgatcctgaaaatgtacaatcttgaagaaccaagattctgaagggtcatataccagagcagcatatgaat |
2090246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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