View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_43 (Length: 315)
Name: NF5478_high_43
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_43 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 454950 - 455256
Alignment:
| Q |
2 |
ctgggtagattatactatcaccaccttatctatcctttcctcttatctaaagtctattaagtaatttattgtttctattccnnnnnnncacaggagaaga |
101 |
Q |
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| T |
454950 |
ctgggtatattttactatcaccaccttatctatcctttcctcttatctaaagtttattaagtaatttattgtttctattcctttttttcacaggagaa-- |
455047 |
T |
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| Q |
102 |
gaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttctttttcttctcaatatg |
201 |
Q |
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| T |
455048 |
---actctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttctttttcttctcaatatg |
455144 |
T |
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| Q |
202 |
aatatggtgcttatcgttatgatgtgaaattgataaaaagttgactcttttatgtttatttttgttgggatattttgcagcattacgttatatcaaaatt |
301 |
Q |
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| T |
455145 |
aat--ggtgcttatcgttatgatgtgaaattgataaaaagttgactcttttatgtttatttttgttgggatattttgcagcattactttatatcaaaatt |
455242 |
T |
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| Q |
302 |
tatattttgagggt |
315 |
Q |
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|||||||||||||| |
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| T |
455243 |
tatattttgagggt |
455256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 466750 - 466828
Alignment:
| Q |
100 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
178 |
Q |
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| T |
466750 |
gagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttcc |
466828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 474235 - 474295
Alignment:
| Q |
100 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctca |
160 |
Q |
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| T |
474235 |
gagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctca |
474295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 446016 - 446101
Alignment:
| Q |
100 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttct |
185 |
Q |
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| T |
446016 |
gagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttct |
446101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 467485 - 467536
Alignment:
| Q |
264 |
tgttgggatattttgcagcattacgttatatcaaaatttatattttgagggt |
315 |
Q |
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| T |
467485 |
tgttgggatatattgcagcattacattgaatcaaaatttatattttgagggt |
467536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 479701 - 479779
Alignment:
| Q |
100 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
178 |
Q |
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| T |
479701 |
gagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc |
479779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 27493602 - 27493542
Alignment:
| Q |
117 |
attccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttc |
177 |
Q |
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| T |
27493602 |
attccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttc |
27493542 |
T |
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