View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_48 (Length: 282)

Name: NF5478_high_48
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_48
NF5478_high_48
[»] chr1 (6 HSPs)
chr1 (25-282)||(44614428-44614685)
chr1 (113-282)||(44793884-44794053)
chr1 (21-106)||(17809928-17810013)
chr1 (25-97)||(44783964-44784036)
chr1 (25-96)||(35900863-35900934)
chr1 (201-278)||(11542502-11542579)
[»] scaffold0017 (3 HSPs)
scaffold0017 (25-91)||(182384-182450)
scaffold0017 (191-279)||(171525-171613)
scaffold0017 (25-90)||(171297-171362)
[»] scaffold0061 (2 HSPs)
scaffold0061 (191-279)||(27179-27267)
scaffold0061 (25-90)||(27430-27495)
[»] chr5 (2 HSPs)
chr5 (191-282)||(29505548-29505639)
chr5 (25-94)||(29505800-29505869)
[»] chr3 (1 HSPs)
chr3 (23-94)||(26730040-26730111)
[»] chr2 (2 HSPs)
chr2 (21-94)||(29218246-29218319)
chr2 (21-94)||(29331545-29331618)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 282
Target Start/End: Original strand, 44614428 - 44614685
Alignment:
Q  25 tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcc 124  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614428 tcttggagagaaacttactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcc 44614527  T
Q  125 tttttactgaaattgtggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaagcatttctataa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614528 tttttactgaaattgtggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaagcatttctataa 44614627  T
Q  225 tttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614628 tttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat 44614685  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 44794053 - 44793884
Alignment:
Q  113 tacttatgttcctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaa 212  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44794053 tacttatatttctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaa 44793954  T
Q  213 gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44793953 gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat 44793884  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 17810013 - 17809928
Alignment:
Q  21 accgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctgg 106  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||||    
T  17810013 accgtcttggagagatacttactccagattcttgaacactttgatattgaaagtcttcacgtggtggaagcagtgaatctacctgg 17809928  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 44784036 - 44783964
Alignment:
Q  25 tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaat 97  Q
    |||||||||||||| ||||||| ||||||||| ||||| ||||||| | ||||||| ||||||||||||||||    
T  44784036 tcttggagagaaacctactccaaattcttgaatactttaatattgagaatcatcatctggtggaagcagtaat 44783964  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 35900863 - 35900934
Alignment:
Q  25 tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaa 96  Q
    |||||||||||||| | ||||| |||||||||||| |||||||||||| || || ||||| |||||||||||    
T  35900863 tcttggagagaaacttgctccaaattcttgaacacattgatattgaaaatcttcttgtggaggaagcagtaa 35900934  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 11542579 - 11542502
Alignment:
Q  201 tgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatc 278  Q
    ||||||||||||||| ||| | |||||||||||||||||||| || |||||||  |  ||| ||||||||||||||||    
T  11542579 tgtgtaactaaagcacttcaacaatttgtattgcatttctcagtgatcaataacatgtcatcaaagacaatatcaatc 11542502  T

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Target: scaffold0017 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 182384 - 182450
Alignment:
Q  25 tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagc 91  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182384 tcttggagagaaacttactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagc 182450  T

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Target: scaffold0017; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 171525 - 171613
Alignment:
Q  191 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatct 279  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| |||||||||||    
T  171525 tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatct 171613  T

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Target: scaffold0017; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 171297 - 171362
Alignment:
Q  25 tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaag 90  Q
    |||||||||||||| ||||||| ||||||||| |||||  |||||| | |  ||||||||||||||    
T  171297 tcttggagagaaacctactccaaattcttgaatactttactattgagaattttcatgtggtggaag 171362  T

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Target: scaffold0061 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 27267 - 27179
Alignment:
Q  191 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatct 279  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| |||||||||||    
T  27267 tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatct 27179  T

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Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 27495 - 27430
Alignment:
Q  25 tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaag 90  Q
    |||||||||||||| ||||||| ||||||||| |||||  |||||| | |  ||||||||||||||    
T  27495 tcttggagagaaacctactccaaattcttgaatactttactattgagaattttcatgtggtggaag 27430  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 29505639 - 29505548
Alignment:
Q  191 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat 282  Q
    ||||||||||||||||||||||   |||||| |||||||||||||||||||| |||||||||||||  ||| ||||||| ||||||||||||    
T  29505639 tgttgatatatgtgtaactaaacattttctacaatttgtattgcatttctcaatgttcaataatctgtcatcaaagacagtatcaatctcat 29505548  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 29505869 - 29505800
Alignment:
Q  25 tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 94  Q
    |||||||||||||| || |||| |||||||||  ||||||||||||||||  ||||||||||||||||||    
T  29505869 tcttggagagaaacctattccaaattcttgaatgctttgatattgaaagtgttcatgtggtggaagcagt 29505800  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 26730040 - 26730111
Alignment:
Q  23 cgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 94  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||    
T  26730040 cgtcttggagagaaacttactccagattcttgaacaccttgatcttgaaagccttcatgtggtggaagcagt 26730111  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 29218319 - 29218246
Alignment:
Q  21 accgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 94  Q
    ||||||||||| |||||| ||||||| |||||||||  |  | ||||||| | |||||||||| ||||||||||    
T  29218319 accgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt 29218246  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 29331618 - 29331545
Alignment:
Q  21 accgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 94  Q
    ||||||||||| |||||| ||||||| |||||||||  |  | ||||||| | |||||||||| ||||||||||    
T  29331618 accgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt 29331545  T

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