View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_52 (Length: 280)
Name: NF5478_high_52
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 30105415 - 30105683
Alignment:
| Q |
5 |
gacatcatcagttccaaggtaaacttgtcacccatacttcattatcacactcaagaatgatgcacaatatattctacaaaatatacctgcaaaaggatgt |
104 |
Q |
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| T |
30105415 |
gacatcatc-gttccaaggtaaacttgtcacccatacttcattatcacactcaagaatgatgcacaatatattctacaaaatatacctgcaaaaggatgt |
30105513 |
T |
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| Q |
105 |
acgtaaaagctatgtggagtagtcacaaaggtactaaagaaaggcaatggaataggaaacataacagggaactcacttatttcccttccacattgaaaga |
204 |
Q |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30105514 |
acataaaagctatgtgtagtagtcacaaaggtactaaagaaaggcaatggaataggaaacataacagggaactcacttatttcccttccacattgaaaga |
30105613 |
T |
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| Q |
205 |
atctatacccaccatttgtttgattatgaatagccaaagttaatggtcccacaccactcagaataatcta |
274 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
30105614 |
atctatacccaccatctgtttgattatgaatagccaaagttaatggtcccacaccactcaaactaatcta |
30105683 |
T |
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