View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_54 (Length: 272)
Name: NF5478_high_54
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 2313544 - 2313310
Alignment:
| Q |
22 |
agtataacaattcatgatacctcaggaccaccagctaaggtgaagtacaagcctttcacaggatgattagccaaagacatttgttgaactggtccaacca |
121 |
Q |
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| T |
2313544 |
agtataacaattcatgatacctcaggaccaccagctaaggtgaagtacaagcctttcacaggatgattagccaaagacatttgttgaactggtccaacca |
2313445 |
T |
|
| Q |
122 |
aattggtaactactgtacttgacattgttattgtcctcctaatatgttgagctactgcctgcatacaacaacaataactaacctcaacaatcttcataat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || | |
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| T |
2313444 |
aattggtaactactgtacttgacattgttattgtcctcctaatatgttgagctactgcctgcatacaacaacaataactaacttcaataatctttgtagt |
2313345 |
T |
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| Q |
222 |
tggattgtagaattctaattaaaaatatttaatta |
256 |
Q |
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|||||| || |||||||| ||||||||||||||| |
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| T |
2313344 |
tggattataacattctaatcaaaaatatttaatta |
2313310 |
T |
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