View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_60 (Length: 258)
Name: NF5478_high_60
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 48357594 - 48357370
Alignment:
| Q |
16 |
atgttgctgggcttcaagtcacggtgaataattttgggcttttgctcatgaagatactgcatagcttgggctatctctatgacccttgttagtctttctt |
115 |
Q |
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| T |
48357594 |
atgttgctgggcttcaagtcacggtgaataattttgggcttttgctcatgaagatactgcatagcttgggctatctctatgacccttgttagtctttctt |
48357495 |
T |
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| Q |
116 |
tgaaaggaggaagtggcacaattctatctctgcgtcttttgccaggaccataaagccactccttaagtgtggtgcttagatattcagtaacaacccaagc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48357494 |
tgaaaggaggaagtggcacaattctatctctgcgtcttttgccaggaccataaagccactccttaagtgtggtgcttagatattcagtaaccacccaagc |
48357395 |
T |
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| Q |
216 |
atgattaggagggtcaagacatgca |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
48357394 |
atgattaggagggtcaagacatgca |
48357370 |
T |
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