View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_64 (Length: 252)
Name: NF5478_high_64
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_64 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 1762572 - 1762340
Alignment:
| Q |
20 |
tatctatcatgaatctttctcttgaggtggcgtttggtaagaaactgtcaccatcactctcacatttctttgcactatcaagtatcatttgcaagagatc |
119 |
Q |
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| T |
1762572 |
tatctatcatgaatctttctcttgaagtggcgtttggtaagaaactgtcaccatcactctcacatttctttgcactatcaagtatcatttgcaagagatc |
1762473 |
T |
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| Q |
120 |
ttgttcatcatgagcatcaatttggcgnnnnnnnatcagctttgatatctttgagcttatctctttctctaatctccacatttgtctattgcttttgttt |
219 |
Q |
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| T |
1762472 |
ttgttcatcatgagcatcaatttggcgttgttttatcagctttgatatctttgaacttatctctttctctaatctccacatttgtctattgcttttgttt |
1762373 |
T |
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| Q |
220 |
ggcaaatatctaaaaccaaattatgattccatt |
252 |
Q |
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| T |
1762372 |
ggcaaatatctaaaaccaaattatgattccatt |
1762340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 25197050 - 25196986
Alignment:
| Q |
169 |
tttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaa |
233 |
Q |
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| T |
25197050 |
tttgagtttatctctttctccagtctccatatttgtatatttctcttgtttggcaagtacctaaa |
25196986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 19207536 - 19207382
Alignment:
| Q |
78 |
ctcacatttctttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgnnnnnnnatcagctttgatatctttgagctt |
177 |
Q |
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| T |
19207536 |
ctcacaattttttgcaccctcaagtatcatttgcaagagatcttgt---tcatgaccttcctcttggcgttgttttacgagcttggatatatttgagttt |
19207440 |
T |
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| Q |
178 |
atctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaac |
235 |
Q |
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| T |
19207439 |
atctctttctctaatctccatatctgtctattgcttttgtttggtaagtatctaaaac |
19207382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 9766 - 9688
Alignment:
| Q |
157 |
agctttgatatctttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaac |
235 |
Q |
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| T |
9766 |
agctttgatatatttgagttaatctcttcctccaatctccatatctgtctattgcttttgtttggcaagtatctaaaac |
9688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 9842 - 9798
Alignment:
| Q |
78 |
ctcacatttctttgcactatcaagtatcatttgcaagagatcttg |
122 |
Q |
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| T |
9842 |
ctcacaattcttagcaccctcaagtatcatttgcaagagatcttg |
9798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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