View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_68 (Length: 249)
Name: NF5478_high_68
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 48357941 - 48358173
Alignment:
| Q |
1 |
atcatattgatcatgagcaattcttgttataatttcttggctataaaactataagaaagtcttactcttattaattgtaacatttttctttatgaatacg |
100 |
Q |
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| T |
48357941 |
atcatattgatcatgagcaat-------ataatttcttggctataaaactagaagaaagtcttactctttttaattgtaacatttttatttatgaatacg |
48358033 |
T |
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| Q |
101 |
ttgttagattgctatggaagtggtagagggtaagctgcggcctacacttccgtcaagggatgatggtgagcatttgggagaattgattgaccttatacgc |
200 |
Q |
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| T |
48358034 |
ttgttagattgctatggaagtggtagagggtaagctgcggcctacacttccgtcaagggatgatggtgagcatttgggagaattgattgaccttatacgc |
48358133 |
T |
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| Q |
201 |
ctttgttgggatggaactccatccactagaccatcctttg |
240 |
Q |
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| T |
48358134 |
ctttgttgggatggaactccatccactagaccatcctttg |
48358173 |
T |
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