View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_77 (Length: 238)
Name: NF5478_high_77
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_77 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 47292299 - 47292498
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292299 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
47292398 |
T |
|
| Q |
120 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47292399 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataaccaaatggatttccacaaagcttccctgcagtggtgac |
47292498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 47298906 - 47299105
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47298906 |
aaattcacttctgagagcctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
47299005 |
T |
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| Q |
120 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |
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| T |
47299006 |
cagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggtttccacaaagcttccttgcagtggtgac |
47299105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 47267926 - 47267750
Alignment:
| Q |
43 |
acgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagta |
142 |
Q |
| |
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|||||| | |||||| | |||||||||||||| |||||||||||||||||| || ||||||||||||||||| || ||||||||||| |||||||| ||| |
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| T |
47267926 |
acgagttacatctgaaacaacacaagaccttatagttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgta |
47267827 |
T |
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| Q |
143 |
acttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
47267826 |
acttcagcttttaattttcttaccaactccacagcataacctaatgagtttccacaaagcttccctgcagtggtgac |
47267750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 47279321 - 47279122
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
119 |
Q |
| |
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||||||||||||| | | ||||||||||||| ||||| | ||||||||| |||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
47279321 |
aaattcacttctgcgtacttagcacgagtcaagtctgatacaacacaagatcttattgttgtaaataaacatcgttccttaataaccataagatctgcca |
47279222 |
T |
|
| Q |
120 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
219 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||| ||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
47279221 |
aagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccataacctaaaggatttccacaaagcttccctgcggtggtgac |
47279122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 47283914 - 47283715
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
119 |
Q |
| |
|
||||||||||||| | | ||||||||||||| ||||| | |||||| || ||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
47283914 |
aaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataaccataagatctgcca |
47283815 |
T |
|
| Q |
120 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
219 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||||||||| | || || |||||||||||||||||||| |||||||| |
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| T |
47283814 |
aagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccctgcggtggtgac |
47283715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 47243045 - 47242862
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| || | | ||||| ||| |||||||||||||||| ||||||||||||||||||| ||| || | |
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| T |
47243045 |
aaattcacttctgagaaattagcacgagtccaatccgacactatacaagttcttccagttgtaaataaacatcgttccttaataaccataaaatctgcta |
47242946 |
T |
|
| Q |
120 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagct |
203 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||| |||||||| |||||||||||||||| | ||| | ||||||||||||| |
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| T |
47242945 |
aagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagct |
47242862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 47257172 - 47256971
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
119 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||| | | ||| | ||| | ||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
47257172 |
aaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgcca |
47257073 |
T |
|
| Q |
120 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
219 |
Q |
| |
|
|| |||||||| | ||| ||||||| ||||||| |||||||| |||||||||||||||| | ||| | ||||||||||||| | ||| |||||||| |
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| T |
47257072 |
atgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgac |
47256973 |
T |
|
| Q |
220 |
tg |
221 |
Q |
| |
|
|| |
|
|
| T |
47256972 |
tg |
47256971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 32731712 - 32731529
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
119 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||| | | ||||| ||| | |||||||||||||| |||||||||||||||||| ||| || | |
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| T |
32731712 |
aaattcacttctgataaattagcacgagtccaatctgacaccatacaagttcttccggttgtaaataaacatcgttccttaataaccatacaatctgcta |
32731613 |
T |
|
| Q |
120 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagct |
203 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||| |||||||| |||||||||||||||| | ||| | ||||||||||||| |
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|
| T |
32731612 |
aagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagct |
32731529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 20519721 - 20519638
Alignment:
| Q |
20 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaata |
103 |
Q |
| |
|
|||||||||||| || | ||||||| ||||||||||| ||||||||| | ||||||||||||| |||||| |||||||||||| |
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| T |
20519721 |
aaattcacttctctgaacttagcacgtgtcaaatctgacataacacaacaacttacagttgtaagtaaacatcgttccttaata |
20519638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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