View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_high_83 (Length: 234)

Name: NF5478_high_83
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_high_83
NF5478_high_83
[»] scaffold1712 (1 HSPs)
scaffold1712 (7-189)||(706-888)
[»] chr3 (3 HSPs)
chr3 (44-162)||(19880928-19881048)
chr3 (9-160)||(4516912-4517063)
chr3 (118-180)||(34022335-34022397)
[»] chr5 (4 HSPs)
chr5 (21-154)||(18317622-18317756)
chr5 (30-92)||(41212876-41212938)
chr5 (118-180)||(23616212-23616274)
chr5 (118-180)||(23847609-23847671)
[»] chr4 (1 HSPs)
chr4 (9-160)||(18036463-18036614)
[»] chr6 (1 HSPs)
chr6 (107-176)||(5632267-5632336)
[»] chr1 (4 HSPs)
chr1 (111-165)||(14762535-14762590)
chr1 (44-90)||(14762620-14762666)
chr1 (118-186)||(7860712-7860781)
chr1 (118-186)||(9614684-9614753)
[»] chr2 (1 HSPs)
chr2 (112-164)||(2894901-2894952)
[»] chr8 (2 HSPs)
chr8 (96-189)||(135944-136038)
chr8 (113-165)||(1236170-1236222)
[»] chr7 (2 HSPs)
chr7 (118-180)||(45110789-45110851)
chr7 (118-186)||(48384846-48384915)


Alignment Details
Target: scaffold1712 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold1712
Description:

Target: scaffold1712; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 706 - 888
Alignment:
Q  7 tcattaaatgtctgtattctaagtttaccctcattagtttatatccaatttgtttcacattcccaagctgagtttaaaagtcacattcatgacttaaaag 106  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  706 tcattaaatatctgtattctaagtttaccatcattagtttatatccaatttgtttcacattctcaagctgagtttaaaagtcacattcatgacttaaaag 805  T
Q  107 tataattccaagacaagggcaaaattgaaaaggtataattttttatcatgacttaaatgcaattaatccatttttctaatagg 189  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||    
T  806 tataattccaagacaagggcaaaattaaaaaggtataattttttatcatgacttaaatgcagttaatgcattttcttaatagg 888  T

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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 19881048 - 19880928
Alignment:
Q  44 tttatatccaatttgtttcacattcccaagctgagtttaaaagtcacattcatgacttaaaagtataattccaagacaagggcaaaattgaaaaggtata 143  Q
    |||||||||||||| |||||||||| || | |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||    
T  19881048 tttatatccaatttatttcacattctcatgttgagttcaaaagtcacattcatgacttaaaagtataattttaagacaagggcaaaatttgaaaggtata 19880949  T
Q  144 attt--tttatcatgacttaa 162  Q
    ||||  |||||||||||||||    
T  19880948 atttaatttatcatgacttaa 19880928  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 4517063 - 4516912
Alignment:
Q  9 attaaatgtctgtattctaagtttaccctcattagtttatatccaatttgtttcacattcccaagctgagtttaaaagtcacattcatgacttaaaagta 108  Q
    ||||||||||  ||||  || ||||||||||||  ||||| |||||| ||||||||||||||| | |||||| ||||||||| |||||||||||||  ||    
T  4517063 attaaatgtcactatttcaattttaccctcatttatttatttccaatctgtttcacattcccatgttgagttcaaaagtcacgttcatgacttaaatata 4516964  T
Q  109 taattccaagacaagggcaaaattgaaaaggtataattttttatcatgactt 160  Q
     ||| | |||| || |||||||||| |||| |||||| |||||| |||||||    
T  4516963 aaatccgaagataaaggcaaaattggaaagttataatgttttatgatgactt 4516912  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 34022335 - 34022397
Alignment:
Q  118 gacaagggcaaaattgaaaaggtataattttttatcatgacttaaatgcaattaatccatttt 180  Q
    ||||||||||||||||||||| | || ||||||| |||||||| |||| ||| ||| ||||||    
T  34022335 gacaagggcaaaattgaaaagttgtacttttttaacatgacttcaatgtaatcaattcatttt 34022397  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 18317756 - 18317622
Alignment:
Q  21 tattctaagtttaccctcattagtttatatccaatttgtttcacattcccaagctgagtttaaaagtcacattcatgacttaaaagtataattccaagac 120  Q
    ||||| || ||||||||||||| ||||||| |||||||||||||||||||  | |||||   ||||||||||||||||||||||| ||||||||||||||    
T  18317756 tattccaaatttaccctcattaatttatattcaatttgtttcacattcccgtgttgagtactaaagtcacattcatgacttaaaaatataattccaagac 18317657  T
Q  121 aagggcaaaattgaaaaggta-taattttttatca 154  Q
    ||||| ||||||| ||| ||| |||||||||||||    
T  18317656 aagggaaaaattggaaaagtagtaattttttatca 18317622  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 41212876 - 41212938
Alignment:
Q  30 tttaccctcattagtttatatccaatttgtttcacattcccaagctgagtttaaaagtcacat 92  Q
    ||||||||||||| |||||||||||||||||| |||| | || | |||||| |||||||||||    
T  41212876 tttaccctcattaatttatatccaatttgttttacatcctcatgttgagttcaaaagtcacat 41212938  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 23616274 - 23616212
Alignment:
Q  118 gacaagggcaaaattgaaaaggtataattttttatcatgacttaaatgcaattaatccatttt 180  Q
    ||||||||||||||||||||| | || ||||||| |||||||| |||| ||| ||| ||||||    
T  23616274 gacaagggcaaaattgaaaagttgtacttttttaacatgacttcaatgtaatcaattcatttt 23616212  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 23847671 - 23847609
Alignment:
Q  118 gacaagggcaaaattgaaaaggtataattttttatcatgacttaaatgcaattaatccatttt 180  Q
    ||||||||||||||||||||| | || ||||||| |||||||| |||| ||| ||| ||||||    
T  23847671 gacaagggcaaaattgaaaagttgtacttttttaacatgacttcaatgtaatcaattcatttt 23847609  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 18036463 - 18036614
Alignment:
Q  9 attaaatgtctgtattctaagtttaccctcattagtttatatccaatttgtttcacattcccaagctgagtttaaaagtcacattcatgacttaaaagta 108  Q
    ||||||||||  ||||  || ||||||||||||  ||||| |||||| ||||||||||||||| | |||||| ||||||||| |||||||||||||  ||    
T  18036463 attaaatgtcactatttcaattttaccctcatttatttatttccaatctgtttcacattcccatgttgagttcaaaagtcacgttcatgacttaaatata 18036562  T
Q  109 taattccaagacaagggcaaaattgaaaaggtataattttttatcatgactt 160  Q
     ||| | |||| || |||||||||| |||| |||||| |||||| |||||||    
T  18036563 aaatccgaagataaaggcaaaattggaaagttataatgttttatgatgactt 18036614  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 5632336 - 5632267
Alignment:
Q  107 tataattccaagacaagggcaaaattgaaaaggtataattttttatcatgacttaaatgcaattaatcca 176  Q
    |||| |||||| ||||||| |||||||||||||| ||| |||||||||||||||||||| | ||||||||    
T  5632336 tatatttccaaaacaaggggaaaattgaaaaggtgtaactttttatcatgacttaaatgtagttaatcca 5632267  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 14762590 - 14762535
Alignment:
Q  111 attccaagacaagggcaaaattgaaaaggtataatt-ttttatcatgacttaaatg 165  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||||||||    
T  14762590 attccaagacaaaagcaaaattgaaaaggtataatttttttatcatgacttaaatg 14762535  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 14762666 - 14762620
Alignment:
Q  44 tttatatccaatttgtttcacattcccaagctgagtttaaaagtcac 90  Q
    ||||||||||||||||||||||||| || | |||||| |||||||||    
T  14762666 tttatatccaatttgtttcacattctcatgttgagttcaaaagtcac 14762620  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 7860781 - 7860712
Alignment:
Q  118 gacaagggcaaaattgaaaaggtata-attttttatcatgacttaaatgcaattaatccatttttctaat 186  Q
    ||||||||||||||||||||| | || |||||||| |||||||| |||| ||| ||| ||||||| ||||    
T  7860781 gacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaat 7860712  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 9614684 - 9614753
Alignment:
Q  118 gacaagggcaaaattgaaaaggtata-attttttatcatgacttaaatgcaattaatccatttttctaat 186  Q
    ||||||||||||||||||||| | || |||||||| |||||||| |||| ||| ||| ||||||| ||||    
T  9614684 gacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaat 9614753  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 2894952 - 2894901
Alignment:
Q  112 ttccaagacaagggcaaaattgaaaaggtataattttttatcatgacttaaat 164  Q
    |||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  2894952 ttccaaaacaagggcaaagttgaaaatgtataat-ttttatcatgacttaaat 2894901  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 136038 - 135944
Alignment:
Q  96 tgacttaaaagtataattccaagacaagggcaaaattgaaaaggtataatt-ttttatcatgacttaaatgcaattaatccatttttctaatagg 189  Q
    ||||||||| |||||||| ||| ||||||| ||| ||| |||  ||||||| ||||||||||| ||||||| | | |||| ||||| ||||||||    
T  136038 tgacttaaatgtataattgcaaaacaagggaaaacttggaaaaatataatttttttatcatgatttaaatgtagtcaatcaattttcctaatagg 135944  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 1236222 - 1236170
Alignment:
Q  113 tccaagacaagggcaaaattgaaaaggtataattttttatcatgacttaaatg 165  Q
    ||||||||||||| |||||||||||  ||| | ||||||| ||||||||||||    
T  1236222 tccaagacaagggtaaaattgaaaaaatatcactttttataatgacttaaatg 1236170  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 45110851 - 45110789
Alignment:
Q  118 gacaagggcaaaattgaaaaggtataattttttatcatgacttaaatgcaattaatccatttt 180  Q
    ||||||||||||||||||||| | || ||||||| |||||||| |||| ||| ||| ||||||    
T  45110851 gacaagggcaaaattgaaaagttgtacttttttaacatgacttcaatgtaatcaattcatttt 45110789  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 48384915 - 48384846
Alignment:
Q  118 gacaagggcaaaattgaaaaggtata-attttttatcatgacttaaatgcaattaatccatttttctaat 186  Q
    ||||||||||||||||||||| | || ||||||||||||||||| |||| ||  ||| ||||||| ||||    
T  48384915 gacaagggcaaaattgaaaagttgtacattttttatcatgacttcaatgtaaccaattcatttttttaat 48384846  T

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