View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_88 (Length: 219)
Name: NF5478_high_88
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_88 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 53493418 - 53493203
Alignment:
| Q |
1 |
tcgcgtactatagcttcaggaaactaagcaatacaatatttattgttctcccctagaaaatattttatattttgttctctatatctttgacgatatactc |
100 |
Q |
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| T |
53493418 |
tcgcgtactatagcttcaggaaactaagcaatacaatatttattgttctcccctagaaaatattttatattttgttctctatatctttgacgatatactc |
53493319 |
T |
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| Q |
101 |
tctctgctcttatactaatatttnnnnnnnnnnnnnnnnnnnnnntctgacttgtttgactttggctttcgtttgctctgacaggttgttgtagttcgga |
200 |
Q |
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| T |
53493318 |
tctctgctcttatactaatattt---aaaaaaaaaaaaagataaatccgacttgtttgactttggctttcgattgctctgacaggttgttgtagtgcgga |
53493222 |
T |
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| Q |
201 |
attgattgagcactatgat |
219 |
Q |
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||||||||||||||||||| |
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| T |
53493221 |
attgattgagcactatgat |
53493203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 16072575 - 16072461
Alignment:
| Q |
5 |
gtactatagcttcaggaaactaagcaatacaatatttattgttctcccctagaaaatattttatattttgttctctatatctttgacgatatactctctc |
104 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| | | | |||||||| | ||||||||||||| | |||||| | | |||||||| |
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| T |
16072575 |
gtactatagcttcaggaaactaagcaatacattatttattgttctcgtccacacaatattttgt-ttttgttctctat-tttttgacaacaaactctctc |
16072478 |
T |
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| Q |
105 |
tgctcttatactaatat |
121 |
Q |
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| T |
16072477 |
tactcttatattaatat |
16072461 |
T |
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