View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_high_9 (Length: 518)
Name: NF5478_high_9
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_high_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 346 - 518
Target Start/End: Original strand, 4366813 - 4366985
Alignment:
| Q |
346 |
gtcactgtcgcatcgtgtcagaaccctaattccgacgctgaaattccttccatcaccattttactctttatcaatttctcacattttgctccttcacttt |
445 |
Q |
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| T |
4366813 |
gtcactgtcgcatcgtgtcagaaccctaattccgacgctaaaattccttccatcaccattttactcttcatcaatttctcacattttgctccttcacttt |
4366912 |
T |
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| Q |
446 |
cgtgtatcaaccaatttcagaattcgtcaaaagagtaccattcacttcaattgaggcgtaaatagttttgatc |
518 |
Q |
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| T |
4366913 |
cgtgtatcaaccaatttcagaattcgtcaaaagagtaccattcacttcttttgaggcgtaaatagttttgatc |
4366985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4366450 - 4366615
Alignment:
| Q |
1 |
ttaaagacaagagattccactataaatgtgatgatttctttatcgaatgatatacaaataccgctattactggtattaaattttgtcgatggagagcttt |
100 |
Q |
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| T |
4366450 |
ttaaagagaaaagattccactatcaatgtgatgatttttttatt-aatgatctacaaatacctctattact---attaaattttgtcgatcgagagcttt |
4366545 |
T |
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| Q |
101 |
atcattattacagttttatccgacatactcaagataatagtctataaagttgtgcacataaatggcgatt |
170 |
Q |
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| T |
4366546 |
atcattattacagttttatccgacatactcaagataatagtctataaagttgggcacataaatggcgatt |
4366615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 4366684 - 4366723
Alignment:
| Q |
240 |
cctcgtgttctgtgtcttagtacaacaagtaccaaaaagc |
279 |
Q |
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| T |
4366684 |
cctcgtgttctgtgtcttagtacaacaagtaccaaaaagc |
4366723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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