View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_1 (Length: 941)

Name: NF5478_low_1
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_1
NF5478_low_1
[»] chr4 (10 HSPs)
chr4 (333-934)||(10490791-10491387)
chr4 (19-245)||(10490469-10490695)
chr4 (550-793)||(10476707-10476950)
chr4 (28-245)||(10476255-10476468)
chr4 (420-478)||(10476490-10476548)
chr4 (477-529)||(10476572-10476624)
chr4 (800-877)||(10474548-10474626)
chr4 (820-877)||(10463628-10463685)
chr4 (600-708)||(7480287-7480395)
chr4 (164-245)||(10465192-10465270)
[»] scaffold1121 (1 HSPs)
scaffold1121 (889-934)||(364-409)
[»] chr2 (2 HSPs)
chr2 (888-934)||(24372724-24372770)
chr2 (565-648)||(160498-160584)
[»] chr3 (2 HSPs)
chr3 (889-934)||(42369934-42369980)
chr3 (888-934)||(5555704-5555750)
[»] chr6 (1 HSPs)
chr6 (629-708)||(20506540-20506619)
[»] chr5 (1 HSPs)
chr5 (630-701)||(13788804-13788875)
[»] chr8 (1 HSPs)
chr8 (904-933)||(22739948-22739977)
[»] chr7 (1 HSPs)
chr7 (904-933)||(21592624-21592653)


Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 333 - 934
Target Start/End: Original strand, 10490791 - 10491387
Alignment:
Q  333 tcccgttagcggccaagaataactaacttgttttcttgaatttaaaagattgtattacaccatgagaagaatgacgacaacactgagttagcttgtcctt 432  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10490791 tcccgttagcggccaagaataact----tgttttcttgaatttaaaagattgtattacaccatgagaagaatgacgacaacactgagttagcttgtcctt 10490886  T
Q  433 caagtaactcattattagcctagcttagaccagtttgctttgatctattgtac-gacataaacaatctatcaaaacctcttgtatacactcatttgtgcc 531  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  10490887 caagtaactcattattagcctaacttagaccagtttgctttgatctattgtactgacataaacagtctatcaaatcctcttgtatacactcatttgtgcc 10490986  T
Q  532 gccgtcctgcttggtagggcttatgtaaaaaatatatattttttaatcacccaaaaatgtaaaactatttaattaattcaatcattatgcgaaagcgctt 631  Q
    ||||||||||||||| |||||| |||||||  | | | |||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10490987 gccgtcctgcttggtcgggcttgtgtaaaatttttttttttttttatcatccaaaaatgttaaactatttaattaattcaatcattatgcgaaagcgctt 10491086  T
Q  632 tcttaatgaataagtttcgtttacgtctgatccatcaaactatccaaatatttcaggtcttatccgctcgtgtgctcccacttaagctccaatcttatct 731  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10491087 tcttaatgaataagtttcatttacgtctgatccatcaaactatccaaatatttcaggtcttatccgctcgtgtgctcccacttaagctccaatcttatct 10491186  T
Q  732 gatccgttttttacttgagctgatacgcatattagttaatttctaagtttctccacagattttgattttgttttaacttaccaatttttcttttactcaa 831  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10491187 gatccgttttttacttgagctgatacgcatattagttaatttctaagtttctccacagattttgattttgttttaacttaccaatttttcttttactcaa 10491286  T
Q  832 gaatccatcaaccacaattcagtatgatccttactttcaattgaacatatatggtggtgaagatgatattgctttagttataggtttgtgttttgatgat 931  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10491287 gaatccatcaaccacaattcagtacgatccttactttcaattgaac--atatggtggtgaagatgatattgctttagttataggtttgtgttttgatgat 10491384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 10490469 - 10490695
Alignment:
Q  19 tggaagacaagaatacctgatcggggtccaacgttcttcaaagtcttactcattttcgtggaattgatgaagaaatagttgaaccgtctgcatagttaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10490469 tggaagacaagaatacctgatcggggtccaacgttcttcaaagtcttgctcattttcgtggaattgatgaagaaatagttgaaccgtctgcatagttaat 10490568  T
Q  119 tccaatttcatgttaagaacccgagaaacttttannnnnnncatctgtttatgtttatattttactgaatcacttcatgtggaattcttcttatattagt 218  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10490569 tccaatttcatgttaagaacccgagaaacttttatttttttcatctgtttatgtttatattttactgaatcacttcatgtggaattcttcttatattagt 10490668  T
Q  219 ttatgcaataatgaaatttggtttatg 245  Q
    |||||||||||||||||||||||||||    
T  10490669 ttatgcaataatgaaatttggtttatg 10490695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 550 - 793
Target Start/End: Original strand, 10476707 - 10476950
Alignment:
Q  550 gcttatgtaaaaaatatatat-tttttaatcacccaaaaatgtaaaactatttaattaattcaatcattatgcgaaagcgctttcttaatgaataagttt 648  Q
    |||| ||| |||||||||||| ||||| ||||||| ||| ||| || ||| ||| |||||| ||| ||||| |||||| || |||||||  |||||||||    
T  10476707 gcttgtgtcaaaaatatatatattttttatcacccgaaagtgttaa-ctaattatttaatttaattattatccgaaagtgcattcttaaccaataagttt 10476805  T
Q  649 cgtttacgtctgatccatcaaactatccaaatatttcaggtcttatccgctcgtgtgctcccacttaagctccaatcttatctgatccgttttttacttg 748  Q
    || ||||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  10476806 cgattacgtccgatccaacaaactatccagatatttccggtcttatccgctcgtgtgctcgcacttaagcttcaatcttatccgatccgttttttacttg 10476905  T
Q  749 agctgatacgcatattagttaatttctaagtttctccacagattt 793  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10476906 agctgatacgcatattagttaatttctaagtttctccacagattt 10476950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 10476255 - 10476468
Alignment:
Q  28 agaatacctgatcggggtccaacgttcttcaaagtcttactcattttcgtggaattgatgaagaaatagttgaaccgtctgcatagttaattccaatttc 127  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||| |||||  |||  ||||| || ||||||| || ||||    
T  10476255 agaatacctgatcggggtccaacattcttcaaagtcttgctcatttttgtggaattgatcaagcaatagccgaagtgtctggatggttaatttcattttc 10476354  T
Q  128 atgttaagaacccgagaaacttttannnnnnncatctgtttatgtttatattttactgaatcacttcatgtggaattcttcttatattagtttatgcaat 227  Q
    |||||| ||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||| ||||    
T  10476355 atgttatgaaccggagaaactttta-tttttacatctgtttatgtttatattttactgaatcacttcatgtcgaa---ttcttatattagtttatacaat 10476450  T
Q  228 aatgaaatttggtttatg 245  Q
    ||||||||||||||||||    
T  10476451 aatgaaatttggtttatg 10476468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 10476490 - 10476548
Alignment:
Q  420 ttagcttgtccttcaagtaactcattattagcctagcttagaccagtttgctttgatct 478  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  10476490 ttagcttgtccatcaagtaactcatgattagccgagcttagaccagtttgctttgatct 10476548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 477 - 529
Target Start/End: Original strand, 10476572 - 10476624
Alignment:
Q  477 ctattgtacgacataaacaatctatcaaaacctcttgtatacactcatttgtg 529  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||||||    
T  10476572 ctattgtacgacataaatagtctatcaaaacctcttgtatccactcatttgtg 10476624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 800 - 877
Target Start/End: Original strand, 10474548 - 10474626
Alignment:
Q  800 tgttttaac-ttaccaatttttcttttactcaagaatccatcaaccacaattcagtatgatccttactttcaattgaac 877  Q
    ||||||||| || ||||| | |||||||||||| |||||||||||||||||||| || ||||||||||||  |||||||    
T  10474548 tgttttaaccttgccaatgtctcttttactcaaaaatccatcaaccacaattcaatacgatccttactttggattgaac 10474626  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 877
Target Start/End: Original strand, 10463628 - 10463685
Alignment:
Q  820 tcttttactcaagaatccatcaaccacaattcagtatgatccttactttcaattgaac 877  Q
    |||||||||||| |||||||||||||||||||| ||  |||||||||||  |||||||    
T  10463628 tcttttactcaaaaatccatcaaccacaattcaataccatccttactttggattgaac 10463685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 600 - 708
Target Start/End: Original strand, 7480287 - 7480395
Alignment:
Q  600 ttaattaattcaatcattatgcgaaagcgctttcttaatgaataagtttcgtttacgtctgatccatcaaactatccaaatatttcaggtcttatccgct 699  Q
    |||||||||| |||||| ||  |||||| |||||||||  ||||| |||||||||  | ||||||| |||||||| |  ||||||  | |||||||||||    
T  7480287 ttaattaatttaatcatcatctgaaagctctttcttaacaaataattttcgtttatatttgatccaacaaactattcggatattttcgatcttatccgct 7480386  T
Q  700 cgtgtgctc 708  Q
    || ||||||    
T  7480387 cgcgtgctc 7480395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 10465192 - 10465270
Alignment:
Q  164 tgtttatgtttatattttactgaatcacttcatgtggaattcttcttatattagtttatgcaataatgaaatttggtttatg 245  Q
    ||||||||||| ||||||| ||||| |||| |||||||| || |   ||||||||||||   ||||||||||||||||||||    
T  10465192 tgtttatgtttttattttattgaataactttatgtggaaatcat---atattagtttataagataatgaaatttggtttatg 10465270  T

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Target: scaffold1121 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 889 - 934
Target Start/End: Original strand, 364 - 409
Alignment:
Q  889 tgaagatgatattgctttagttataggtttgtgttttgatgatgtc 934  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  364 tgaagatgatattgctttagttataggtttgtgttttgatgatgtc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 888 - 934
Target Start/End: Original strand, 24372724 - 24372770
Alignment:
Q  888 gtgaagatgatattgctttagttataggtttgtgttttgatgatgtc 934  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  24372724 gtgaagatgatattgctttagtcataggtttgtgttttgatgatgtc 24372770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 648
Target Start/End: Complemental strand, 160584 - 160498
Alignment:
Q  565 atatattttttaatcacccaaaaatgtaaaactattta---attaattcaatcattatgcgaaagcgctttcttaatgaataagttt 648  Q
    ||||||||||| |||||| |||||||| ||| |||||    ||||||| |||||||||  ||||||||||||||||  |||||||||    
T  160584 atatatttttttatcacctaaaaatgttaaattatttttttattaatttaatcattatctgaaagcgctttcttaacaaataagttt 160498  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 889 - 934
Target Start/End: Complemental strand, 42369980 - 42369934
Alignment:
Q  889 tgaagatgatattgcttt-agttataggtttgtgttttgatgatgtc 934  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  42369980 tgaagatgatattgcttttagttataggtttgtgttttgatgatgtc 42369934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 888 - 934
Target Start/End: Complemental strand, 5555750 - 5555704
Alignment:
Q  888 gtgaagatgatattgctttagttataggtttgtgttttgatgatgtc 934  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||    
T  5555750 gtgaagatgatgttgccttagttataggtttgtgttttgattatgtc 5555704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 708
Target Start/End: Complemental strand, 20506619 - 20506540
Alignment:
Q  629 ctttcttaatgaataagtttcgtttacgtctgatccatcaaactatccaaatatttcaggtcttatccgctcgtgtgctc 708  Q
    |||||||||||||||||||| |||||  | || |||| |||||||| |  ||||||| || ||||||||||| |||||||    
T  20506619 ctttcttaatgaataagttttgtttaaatttggtccaacaaactattcggatatttccggccttatccgctcatgtgctc 20506540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 701
Target Start/End: Complemental strand, 13788875 - 13788804
Alignment:
Q  630 tttcttaatgaataagtttcgtttacgtctgatccatcaaactatccaaatatttcaggtcttatccgctcg 701  Q
    ||||||||||||||||||| |||||  ||||||||| |||| |||    ||||||| |||||||||||||||    
T  13788875 tttcttaatgaataagttttgtttaaatctgatccaacaaattatttggatatttctggtcttatccgctcg 13788804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 904 - 933
Target Start/End: Original strand, 22739948 - 22739977
Alignment:
Q  904 tttagttataggtttgtgttttgatgatgt 933  Q
    ||||||||||||||||||||||||||||||    
T  22739948 tttagttataggtttgtgttttgatgatgt 22739977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 904 - 933
Target Start/End: Complemental strand, 21592653 - 21592624
Alignment:
Q  904 tttagttataggtttgtgttttgatgatgt 933  Q
    ||||||||||||||||||||||||||||||    
T  21592653 tttagttataggtttgtgttttgatgatgt 21592624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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