View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_11 (Length: 509)

Name: NF5478_low_11
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_11
NF5478_low_11
[»] chr6 (4 HSPs)
chr6 (19-443)||(8636343-8636775)
chr6 (121-182)||(10200797-10200858)
chr6 (364-443)||(7100167-7100246)
chr6 (364-443)||(8794384-8794463)
[»] chr5 (7 HSPs)
chr5 (19-312)||(9840690-9840984)
chr5 (453-499)||(9841018-9841064)
chr5 (364-422)||(7948551-7948609)
chr5 (259-301)||(5949058-5949100)
chr5 (364-420)||(4240686-4240742)
chr5 (259-303)||(4550472-4550516)
chr5 (259-303)||(37013861-37013905)
[»] chr3 (12 HSPs)
chr3 (72-443)||(28145955-28146340)
chr3 (72-443)||(45134764-45135138)
chr3 (404-443)||(43151162-43151201)
chr3 (249-303)||(31646490-31646544)
chr3 (364-421)||(39842664-39842721)
chr3 (259-303)||(18749516-18749560)
chr3 (259-303)||(18749600-18749644)
chr3 (259-303)||(27240459-27240503)
chr3 (259-303)||(44906729-44906773)
chr3 (278-306)||(45215403-45215431)
chr3 (259-303)||(50903459-50903503)
chr3 (259-303)||(54628789-54628833)
[»] chr2 (14 HSPs)
chr2 (19-213)||(21987441-21987635)
chr2 (321-443)||(21987294-21987416)
chr2 (259-303)||(28740501-28740545)
chr2 (404-443)||(2372972-2373011)
chr2 (367-421)||(9120084-9120138)
chr2 (249-295)||(10125414-10125460)
chr2 (335-421)||(14198785-14198870)
chr2 (364-422)||(33135538-33135596)
chr2 (249-306)||(3463616-3463673)
chr2 (364-421)||(3858188-3858245)
chr2 (259-303)||(215443-215487)
chr2 (259-303)||(378927-378971)
chr2 (259-303)||(13833598-13833642)
chr2 (259-303)||(28844503-28844547)
[»] chr1 (14 HSPs)
chr1 (364-429)||(14555313-14555378)
chr1 (364-443)||(19007581-19007660)
chr1 (364-443)||(48194593-48194672)
chr1 (364-443)||(48203351-48203430)
chr1 (335-421)||(49230794-49230880)
chr1 (367-421)||(9577670-9577724)
chr1 (365-422)||(8416439-8416496)
chr1 (364-421)||(28387628-28387685)
chr1 (259-303)||(18798431-18798475)
chr1 (367-423)||(22183276-22183332)
chr1 (259-303)||(29219228-29219272)
chr1 (259-303)||(46327982-46328026)
chr1 (335-419)||(49198474-49198557)
chr1 (94-145)||(51287661-51287713)
[»] chr8 (7 HSPs)
chr8 (259-303)||(32497430-32497474)
chr8 (364-421)||(16362111-16362168)
chr8 (335-420)||(39467673-39467757)
chr8 (259-303)||(4403054-4403098)
chr8 (259-303)||(7466282-7466326)
chr8 (259-303)||(18306176-18306220)
chr8 (259-303)||(39467683-39467726)
[»] chr4 (6 HSPs)
chr4 (335-443)||(38230775-38230883)
chr4 (259-303)||(49835029-49835073)
chr4 (249-303)||(50018197-50018251)
chr4 (364-420)||(29649902-29649958)
chr4 (259-303)||(37915731-37915775)
chr4 (259-303)||(54853684-54853728)
[»] scaffold0110 (1 HSPs)
scaffold0110 (261-303)||(39835-39877)
[»] scaffold0042 (1 HSPs)
scaffold0042 (335-421)||(58241-58326)
[»] chr7 (10 HSPs)
chr7 (249-303)||(7993083-7993137)
chr7 (364-422)||(9882470-9882528)
chr7 (367-420)||(31638792-31638845)
chr7 (364-421)||(39784008-39784065)
chr7 (259-308)||(48154762-48154811)
chr7 (259-303)||(17001238-17001282)
chr7 (364-420)||(33382547-33382603)
chr7 (259-303)||(37327868-37327912)
chr7 (263-303)||(37972993-37973033)
chr7 (259-303)||(48117808-48117852)
[»] scaffold1504 (2 HSPs)
scaffold1504 (364-421)||(778-835)
scaffold1504 (259-303)||(810-854)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 8636343 - 8636775
Alignment:
Q  19 aaaatggaagagatgaagatacataagaaacatacagagatacagatacattcgagaatgggaaaggagataagggagatgtaaaattataaaagaaata 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||    
T  8636343 aaaatggaagagatgaagatacgtaagaaacatacagagatacagatacatttgagaaaggggaaggagataagggagatgtaaaaatataaaagaaata 8636442  T
Q  119 aaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagctaaaaaatcactgaaaagtccatcaaagtcttgtgaaatcctannnnn 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         
T  8636443 aaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagctaaaaaatcactgaaaagtccatcaaagtcttgtgaaatcttattttt 8636542  T
Q  219 nnaacaatccgtcgaaatcagaannnnnnngaatatcatgagacttttttaaagttctaaaaagttttgattgaataccacaagatttctagactttgtt 318  Q
      |||||||| ||||||||||||       ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||    
T  8636543 ttaacaatccatcgaaatcagaatttttttgaataccatgagatttttttaaagttctaaaaagttttgattgaatatcacaaaatttttagaccttgtt 8636642  T
Q  319 t--------gagaaaatcctaatcgaataccactagacttttttaatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtc 410  Q
    |         ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||    
T  8636643 ttaaaaatctagaaaatcctaattgaataccattagacttttttaatttaaacaaaagtcttgatcgaataccacgtgactttttcatcatagaaaagtc 8636742  T
Q  411 ttttaaaatccttctaaatcccaattgaataca 443  Q
    |||||||||| ||||||||||||||||||||||    
T  8636743 ttttaaaatctttctaaatcccaattgaataca 8636775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 10200797 - 10200858
Alignment:
Q  121 aaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagctaaaaaatcact 182  Q
    |||||||||||||| |||||||||||||||  | ||||||||||||||| ||||||||||||    
T  10200797 aaatgagaatccattgaaatctcatgatgtgaggaaagactttttaaaggtaaaaaatcact 10200858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 7100246 - 7100167
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    |||||||||||||||||||||    | ||||||||  || |||||||||||||||||| |  ||||||||||| ||||||    
T  7100246 aaaagtcttgattgaataccactagactttttcattctaaaaaagtcttttaaaatcccttgaaatcccaattcaataca 7100167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 8794384 - 8794463
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    |||||||||||||||||||||    | ||||||||  || |||||||||||||||||| |  ||||||||||| ||||||    
T  8794384 aaaagtcttgattgaataccactagactttttcattctaaaaaagtcttttaaaatcccttgaaatcccaattcaataca 8794463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 9840690 - 9840984
Alignment:
Q  19 aaaatggaagagatgaagatacataagaaacatacagagatacagatacattcgagaatgggaaaggagataagggagatgtaaaattataaaagaaat- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  9840690 aaaatggaagagatgaagatacataagaaacatacagagatacagatacattcgagaatgggaaagaagataagggagatgtaaaattataaaagaaata 9840789  T
Q  118 aaaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagctaaaaaatcactgaaaagtccatcaaagtcttgtgaaatcctannnn 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  9840790 aaaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagctaaaaaatcactgaaaagtccatcaaagtcttgtgaaatcctatttt 9840889  T
Q  218 nnnaacaatccgtcgaaatcagaannnnnnngaatatcatgagacttttttaaagttctaaaaagttttgattgaataccacaagatttctagac 312  Q
       |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9840890 tttaacaatccgtcgaaatcagaatttttttgaatatcatgagacttttttaaagttctaaaaagttttgattgaataccacaagatttctagac 9840984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 9841018 - 9841064
Alignment:
Q  453 atttgatgatttcaaaattccaaaattatcctttttcatatgttcat 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9841018 atttgatgatttcaaaattccaaaattatcctttttcatatgttcat 9841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 7948551 - 7948609
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcct 422  Q
    ||||||||||||||||||||| |  | |||||||| ||| |||||||||||||||||||    
T  7948551 aaaagtcttgattgaataccacgagactttttcataataaaaaagtcttttaaaatcct 7948609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 5949100 - 5949058
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaa 301  Q
    |||||||||| |||||  |||||||||||||||||||||||||    
T  5949100 agactttttttaagttgcaaaaagttttgattgaataccacaa 5949058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 4240686 - 4240742
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatc 420  Q
    |||||||||||||||||||||   || |||||||| ||  |||||||||||||||||    
T  4240686 aaaagtcttgattgaataccacaaaactttttcataattaaaaagtcttttaaaatc 4240742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 4550472 - 4550516
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  4550472 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 4550516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 37013905 - 37013861
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  37013905 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 37013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 72 - 443
Target Start/End: Original strand, 28145955 - 28146340
Alignment:
Q  72 gagaatgggaaaggagataagggagatgtaaaattataaaagaaataaaaaa-tgagaatccatagaaatctcatgatgttggtaaagactttttaaagc 170  Q
    ||||| ||| |||||||||||||||||||||||  | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28145955 gagaaaggggaaggagataagggagatgtaaaaacaaaaaagaaataaaaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagc 28146054  T
Q  171 taaaaaatcactgaaa-----agtccatcaaagtcttgtgaaatcctannnnnnnaacaatccgtcgaaatcagaannnnnnngaatatcatgagacttt 265  Q
    ||||||||| || |||     ||||||||||| ||    ||||||| |       |||||||| ||||||||||||        |||| ||  |||||||    
T  28146055 taaaaaatccctaaaattaaaagtccatcaaaatccatagaaatcccatttttttaacaatccatcgaaatcagaattttttttaataccacaagacttt 28146154  T
Q  266 tttaaagttctaaaaagttttgattgaataccacaagatttctagactttgtttga--------gaaaatcctaatcgaataccactagacttttttaat 357  Q
    || |||||| |||||||||||||||||||| ||||||||||||||||||||||| |        |||||||||||||||||||||||| |||||||||||    
T  28146155 ttgaaagttgtaaaaagttttgattgaatatcacaagatttctagactttgttttaaaagtctagaaaatcctaatcgaataccactaaacttttttaat 28146254  T
Q  358 ttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    ||||||||||||||||||||||||||   | | |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  28146255 ttaaacaaaagtcttgattgaataccccatgactttttcatcataaaaaagtcttttaaaatccttccaaatcccaattgaataca 28146340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 72 - 443
Target Start/End: Complemental strand, 45135138 - 45134764
Alignment:
Q  72 gagaatgggaaaggagataagggagatgtaaaattataaaagaaataaaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagct 171  Q
    ||||| ||| |||||||||||||||||||||||  | ||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  45135138 gagaaaggggaaggagataagggagatgtaaaaacaaaaatgaaataaaaaatgaaaatccatagaaatttcatgatgttggtaaagactttttaaagtt 45135039  T
Q  172 aaaaaatcactgaaaagtccatcaaagtcttgtgaaatcctannnnnnnaacaatccgtcgaaatcagaannnnnnngaatatcatgagacttttttaaa 271  Q
    ||||||| |||||||||||||||||| ||    ||||||| |       ||||||  || ||||||| ||       ||||| |||| ||||||||||||    
T  45135038 aaaaaattactgaaaagtccatcaaaatccatagaaatcccatttttttaacaatatgttgaaatcataaacattttgaataccatgggacttttttaaa 45134939  T
Q  272 gttctaaaaagttttgattgaataccacaagatttctagactttgttt--------gagaaaatcctaatcgaataccactagacttttttaatttaaac 363  Q
    ||| |||||| | ||||||||||||||||| |||||||||||||||||         |||||||||||||| |||||||||| |||||||||||||||||    
T  45134938 gttgtaaaaaatcttgattgaataccacaaaatttctagactttgttttaaaagtctagaaaatcctaatcaaataccactatacttttttaatttaaac 45134839  T
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    ||||||||||||||||||||     | |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  45134838 aaaagtcttgattgaatacc-----actttttcatcataaaaaagtattttaaaatcctttcaaatcccaattgaataca 45134764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 443
Target Start/End: Complemental strand, 43151201 - 43151162
Alignment:
Q  404 aaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  43151201 aaaagtcttttaaaatccttcaaaatcccaattcaataca 43151162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 31646490 - 31646544
Alignment:
Q  249 gaatatcatgagacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    ||||| ||| |||||||||| |||||  ||||||| |||||||||||||||||||    
T  31646490 gaataccataagactttttttaagttgcaaaaagtcttgattgaataccacaaga 31646544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 39842664 - 39842721
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    |||||||||||||||||||||   || |||||||| ||  ||||||||||||||||||    
T  39842664 aaaagtcttgattgaataccacaaaactttttcataattaaaaagtcttttaaaatcc 39842721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 18749560 - 18749516
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  18749560 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 18749516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 18749644 - 18749600
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||||||||  | |||||||||||||||||||| |||||    
T  18749644 agacttttttaaagtgatgaaaagttttgattgaatacctcaaga 18749600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 27240459 - 27240503
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  27240459 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 27240503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 44906729 - 44906773
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  44906729 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 44906773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 45215403 - 45215431
Alignment:
Q  278 aaaagttttgattgaataccacaagattt 306  Q
    |||||||||||||||||||||||||||||    
T  45215403 aaaagttttgattgaataccacaagattt 45215431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 50903459 - 50903503
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  50903459 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 50903503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 54628833 - 54628789
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  54628833 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 54628789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 8e-87; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 21987635 - 21987441
Alignment:
Q  19 aaaatggaagagatgaagatacataagaaacatacagagatacagatacattcgagaatgggaaaggagataagggagatgtaaaattataaaagaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||  ||||||||| |||||||||||||    
T  21987635 aaaatggaagagatgaagatacataagaaacatacagagatacagatacattcgataaaggggaaggagataaggtcgatgtaaaaatataaaagaaata 21987536  T
Q  119 aaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagctaaaaaatcactgaaaagtccatcaaagtcttgtgaaatccta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  21987535 aaaaatgagaatccatagaaatctcatgatgttggtaaagactttttaaagctaaaaaatccctgaaaagttcatcaaagtcttgtgaaatccta 21987441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 321 - 443
Target Start/End: Complemental strand, 21987416 - 21987294
Alignment:
Q  321 agaaaatcctaatcgaataccactagacttttttaatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatc 420  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |  ||| |||||||||||| |||||||||||||||||    
T  21987416 agaaaatcctaatcgaataccactaaacttttttaatttaaacaaaagttttgattgaatactacataactttttcatcataaaaaagtcttttaaaatc 21987317  T
Q  421 cttctaaatcccaattgaataca 443  Q
    ||| |||||  ||||||||||||    
T  21987316 cttttaaatttcaattgaataca 21987294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 28740501 - 28740545
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  |||||||||||||||||||||||||||    
T  28740501 agactttttttaagttgcaaaaagttttgattgaataccacaaga 28740545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 443
Target Start/End: Complemental strand, 2373011 - 2372972
Alignment:
Q  404 aaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  2373011 aaaagtcttttaaaatccttcgaaatcccaattcaataca 2372972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 9120138 - 9120084
Alignment:
Q  367 agtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    ||||||||||||||||||  | | |||||||| ||| ||||||||||||||||||    
T  9120138 agtcttgattgaataccacatgattttttcatgataaaaaagtcttttaaaatcc 9120084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 10125414 - 10125460
Alignment:
Q  249 gaatatcatgagacttttttaaagttctaaaaagttttgattgaata 295  Q
    |||||||||||||||||||| ||||  | ||||||||||||||||||    
T  10125414 gaatatcatgagactttttttaagtgatgaaaagttttgattgaata 10125460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 421
Target Start/End: Original strand, 14198785 - 14198870
Alignment:
Q  335 gaataccactagacttttttaatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    ||||| ||| |||||||||||| ||| | || ||||||||||||||||||    | |||||||| ||| ||||||||||||||||||    
T  14198785 gaataacacaagacttttttaaattaga-aagagtcttgattgaataccacaagactttttcatgataaaaaagtcttttaaaatcc 14198870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 33135596 - 33135538
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcct 422  Q
    ||||||||||||||||||||||   | |||||||| ||  |||||||||||||||||||    
T  33135596 aaaagtcttgattgaataccataagactttttcataattaaaaagtcttttaaaatcct 33135538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 3463673 - 3463616
Alignment:
Q  249 gaatatcatgagacttttttaaagttctaaaaagttttgattgaataccacaagattt 306  Q
    |||||| || |||||||||| || ||  ||||||| ||||||||||||||||||||||    
T  3463673 gaatattataagactttttttaaattgcaaaaagtcttgattgaataccacaagattt 3463616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 3858188 - 3858245
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    |||||||||||||||||||||   || ||||| |||||  ||||||||||||||||||    
T  3858188 aaaagtcttgattgaataccaaaaaagttttttatcattaaaaagtcttttaaaatcc 3858245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 215443 - 215487
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  215443 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 378971 - 378927
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  378971 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 378927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 13833598 - 13833642
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    ||||||||||||| |  |||||||| |||||||||||||||||||    
T  13833598 agacttttttaaaatgataaaaagtcttgattgaataccacaaga 13833642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 28844547 - 28844503
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  28844547 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 28844503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 14555313 - 14555378
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaat 429  Q
    |||||||||||||||||||||   || ||||| || ||| |||||||||||||||||||| |||||    
T  14555313 aaaagtcttgattgaataccaccaaacttttttattataaaaaagtcttttaaaatccttttaaat 14555378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 19007581 - 19007660
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    |||||||||||||||||||||    | |||||||| ||| |||||||||||||||||| |  ||||| ||||| ||||||    
T  19007581 aaaagtcttgattgaataccactagactttttcattataaaaaagtcttttaaaatcccttgaaatctcaattcaataca 19007660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 48194672 - 48194593
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    |||||||||||||||||||||    | ||||||||  || |||||||||||||||||| |  ||||||||||| ||||||    
T  48194672 aaaagtcttgattgaataccactagactttttcattctaaaaaagtcttttaaaatcccttgaaatcccaattcaataca 48194593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 48203430 - 48203351
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaattgaataca 443  Q
    |||||||||||||||||||||    | ||||||||  || |||||||||||||||||| |  ||||||||||| ||||||    
T  48203430 aaaagtcttgattgaataccactagactttttcattctaaaaaagtcttttaaaatcccttgaaatcccaattcaataca 48203351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 49230880 - 49230794
Alignment:
Q  335 gaataccactagactttttt-aatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    ||||||||| |||||||||| |||||  | |||||||||||||||||||||  | | |||||||| ||  ||||||||||||||||||    
T  49230880 gaataccacaagactttttttaatttgca-aaaagtcttgattgaataccacatgactttttcataattaaaaagtcttttaaaatcc 49230794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 9577670 - 9577724
Alignment:
Q  367 agtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    ||||||||||||||||||   || |||||||||||  ||||||||||||||||||    
T  9577670 agtcttgattgaataccacaaaactttttcatcattaaaaagtcttttaaaatcc 9577724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 8416439 - 8416496
Alignment:
Q  365 aaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcct 422  Q
    ||||||||||||||| ||||  |||||||| ||||||| || ||| ||||||||||||    
T  8416439 aaagtcttgattgaacaccacctaaattttacatcataaaatagtattttaaaatcct 8416496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 28387628 - 28387685
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    ||||||||||||||||||||||   | |||||||| ||  ||||||||||||||||||    
T  28387628 aaaagtcttgattgaataccataagactttttcataattaaaaagtcttttaaaatcc 28387685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 18798475 - 18798431
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  18798475 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 18798431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 22183332 - 22183276
Alignment:
Q  367 agtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcctt 423  Q
    ||||||||||||||||||    | |||||||| ||| ||||||||||||||||||||    
T  22183332 agtcttgattgaataccacaagactttttcatgataaaaaagtcttttaaaatcctt 22183276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 29219272 - 29219228
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  29219272 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 29219228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 46328026 - 46327982
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||||||||||||||| |||||||    
T  46328026 agactttttttaagttgcaaaaagttttgattgaataacacaaga 46327982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 419
Target Start/End: Original strand, 49198474 - 49198557
Alignment:
Q  335 gaataccactagacttttttaatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaat 419  Q
    ||||| ||| |||||||||||| || || || ||||||||||||||||||    | |||||||| ||| ||||||||||||||||    
T  49198474 gaataacacaagacttttttaaattgaa-aagagtcttgattgaataccacaagactttttcatgataaaaaagtcttttaaaat 49198557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 51287713 - 51287661
Alignment:
Q  94 gagatgtaaaattataaaagaaataaaaa-atgagaatccatagaaatctcat 145  Q
    |||||||||||  ||||||||||||| |  |||||||||||||||||||||||    
T  51287713 gagatgtaaaagcataaaagaaataagattatgagaatccatagaaatctcat 51287661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 32497474 - 32497430
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||    
T  32497474 agactttttttaagttgtaaaaagtcttgattgaataccacaaga 32497430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 16362168 - 16362111
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    |||||||||||||||||||||   || |||||||| ||  ||||||||||||||||||    
T  16362168 aaaagtcttgattgaataccacaaaactttttcataattaaaaagtcttttaaaatcc 16362111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 420
Target Start/End: Original strand, 39467673 - 39467757
Alignment:
Q  335 gaataccactagacttttttaatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatc 420  Q
    ||||||||| |||||||||||| ||  | |||||||||||||||||||||    | |||||||| ||  |||||||||||||||||    
T  39467673 gaataccacaagacttttttaagttgta-aaaagtcttgattgaataccacaagactttttcataattaaaaagtcttttaaaatc 39467757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 4403098 - 4403054
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  |||||||||||||||||||||| ||||    
T  4403098 agactttttttaagttgcaaaaagttttgattgaataccaaaaga 4403054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 7466326 - 7466282
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  7466326 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 7466282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 18306176 - 18306220
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  18306176 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 18306220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 39467683 - 39467726
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||    
T  39467683 agacttttttaa-gttgtaaaaagtcttgattgaataccacaaga 39467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 443
Target Start/End: Complemental strand, 38230883 - 38230775
Alignment:
Q  335 gaataccactagacttttttaatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatccttctaaatcccaa 434  Q
    ||||||||| ||| || ||||| ||  | |||||||||||||||||||||    | ||||||||  || |||||||||||||||||| |  |||||||||    
T  38230883 gaataccacaagatttgtttaaattttataaaagtcttgattgaataccactagactttttcattctaaaaaagtcttttaaaatcccttgaaatcccaa 38230784  T
Q  435 ttgaataca 443  Q
    || ||||||    
T  38230783 ttcaataca 38230775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 49835029 - 49835073
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  |||||||||||||||||||||||||||    
T  49835029 agactttttttaagttgcaaaaagttttgattgaataccacaaga 49835073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 50018251 - 50018197
Alignment:
Q  249 gaatatcatgagacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    ||||| ||| |||||||||| || || |||||||| |||||||||||||||||||    
T  50018251 gaataccataagactttttttaaattgtaaaaagtcttgattgaataccacaaga 50018197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 29649902 - 29649958
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatc 420  Q
    |||||||||||||||||||||   || |||||||| ||  |||||||||||||||||    
T  29649902 aaaagtcttgattgaataccacaaaactttttcataattaaaaagtcttttaaaatc 29649958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 37915775 - 37915731
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  37915775 agactttttttaagttacaaaaagtcttgattgaataccacaaga 37915731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 54853684 - 54853728
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  54853684 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 54853728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 39835 - 39877
Alignment:
Q  261 acttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||| ||||| |||||||| |||||||||||||||||||    
T  39835 actttttttaagttgtaaaaagtcttgattgaataccacaaga 39877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 421
Target Start/End: Original strand, 58241 - 58326
Alignment:
Q  335 gaataccactagacttttttaatttaaacaaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    ||||||||| |||||||||||| ||  | |||||||||||||||||||||    | |||||||| ||  ||||||||||||||||||    
T  58241 gaataccacaagacttttttaagttgca-aaaagtcttgattgaataccacaagactttttcataattaaaaagtcttttaaaatcc 58326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 7993137 - 7993083
Alignment:
Q  249 gaatatcatgagacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    ||||| || ||||||||||| |||||  ||||||| |||||||||||||||||||    
T  7993137 gaataccacgagactttttttaagttgcaaaaagtcttgattgaataccacaaga 7993083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 9882470 - 9882528
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcct 422  Q
    ||||||||||||||||||||||   | |||||||| ||  |||||||||||||||||||    
T  9882470 aaaagtcttgattgaataccataagactttttcataattaaaaagtcttttaaaatcct 9882528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 31638845 - 31638792
Alignment:
Q  367 agtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatc 420  Q
    ||||||||||||||||||  | | |||||||| ||| |||||||||||||||||    
T  31638845 agtcttgattgaataccacatgactttttcatgataaaaaagtcttttaaaatc 31638792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 39784065 - 39784008
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    |||||||||||||||||||||  | | |||||||| ||  ||||||||||||||||||    
T  39784065 aaaagtcttgattgaataccacatgactttttcataattaaaaagtcttttaaaatcc 39784008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 48154762 - 48154811
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaagatttct 308  Q
    |||||||||  ||||| |||| ||| ||||||||||||||||||||||||    
T  48154762 agactttttataagttgtaaatagtcttgattgaataccacaagatttct 48154811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 17001238 - 17001282
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  17001238 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 17001282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 33382603 - 33382547
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatc 420  Q
    ||||||||||||||||||||||   | |||||||| ||  |||||||||||||||||    
T  33382603 aaaagtcttgattgaataccataagactttttcataattaaaaagtcttttaaaatc 33382547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 37327912 - 37327868
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  37327912 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 37327868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 37972993 - 37973033
Alignment:
Q  263 ttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||| ||||| |||||||| |||||||||||||||||||    
T  37972993 tttttttaagttgtaaaaagtcttgattgaataccacaaga 37973033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 48117808 - 48117852
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  48117808 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 48117852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 835 - 778
Alignment:
Q  364 aaaagtcttgattgaataccatgtaaatttttcatcatagaaaagtcttttaaaatcc 421  Q
    |||||||||||||||||||||    |||||||||| ||  ||||||||||||||||||    
T  835 aaaagtcttgattgaataccacaagaatttttcataattaaaaagtcttttaaaatcc 778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 854 - 810
Alignment:
Q  259 agacttttttaaagttctaaaaagttttgattgaataccacaaga 303  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||    
T  854 agactttttttaagttgcaaaaagtcttgattgaataccacaaga 810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University