View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_12 (Length: 508)

Name: NF5478_low_12
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_12
NF5478_low_12
[»] chr1 (9 HSPs)
chr1 (156-503)||(44614765-44615112)
chr1 (156-503)||(44793457-44793804)
chr1 (156-345)||(44789760-44789949)
chr1 (246-403)||(44146823-44146980)
chr1 (246-391)||(44783372-44783517)
chr1 (329-429)||(44789646-44789743)
chr1 (7-66)||(44783642-44783701)
chr1 (1-36)||(44614686-44614721)
chr1 (1-36)||(44793848-44793883)
[»] chr5 (2 HSPs)
chr5 (156-312)||(29505175-29505328)
chr5 (1-155)||(29505387-29505547)


Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 156 - 503
Target Start/End: Original strand, 44614765 - 44615112
Alignment:
Q  156 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat 255  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44614765 ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgat 44614864  T
Q  256 tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt 355  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614865 tgtgttttgttaggcttttaatttcaattttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt 44614964  T
Q  356 tagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgactta 455  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614965 tagtgtgtgattgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgactta 44615064  T
Q  456 aatattatttattagcacaattattcacccacttatgcctttgctact 503  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  44615065 aatattctttattagcacaattattcacccacttatgcctttgttact 44615112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 156 - 503
Target Start/End: Complemental strand, 44793804 - 44793457
Alignment:
Q  156 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat 255  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44793804 ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgat 44793705  T
Q  256 tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt 355  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44793704 tgtgttttgtttggctttcaatttcaattttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt 44793605  T
Q  356 tagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgactta 455  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44793604 tagtgtgtgattgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattttaagagtcatcagtgactta 44793505  T
Q  456 aatattatttattagcacaattattcacccacttatgcctttgctact 503  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  44793504 aatattctttattagcacaattattcacccacttatgcctttgttact 44793457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 156 - 345
Target Start/End: Complemental strand, 44789949 - 44789760
Alignment:
Q  156 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat 255  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44789949 ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgat 44789850  T
Q  256 tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt 345  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||  || |||||||||||||||||| ||||    
T  44789849 tgtgttttgtttggctttcaatttcaagtttgacagtttttgtatgaaaatcttctgctatcgagtgattaatgtaataaatggattttt 44789760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 246 - 403
Target Start/End: Original strand, 44146823 - 44146980
Alignment:
Q  246 agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt 345  Q
    |||||||||||||||||| ||  ||||| ||||||||| |||| |||||||||||||||||||||||| |||  |||| |||||||||| ||||| ||||    
T  44146823 agtgtttgattgtgtttttttctgctttcaatttcaaggttgacagtttttgtatggaaatcttctgccatcgagttaataatgtaatagatggagtttt 44146922  T
Q  346 gttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataat 403  Q
    ||||||| |||||||  ||||||||||||||||||||||||| |||| | ||||||||    
T  44146923 gttaaaattttagtgcttgactgtgttttgttatggcttctgttatcgagttaataat 44146980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 44783517 - 44783372
Alignment:
Q  246 agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt 345  Q
    |||||||||||||||||| ||   |||| |||||||||||||    ||||||||| ||||||||||||||||  |||| |||||||||||||||| || |    
T  44783517 agtgtttgattgtgtttttttctactttcaatttcaagtttggtgatttttgtattgaaatcttctgctatcgagttaataatgtaataaatggacttct 44783418  T
Q  346 gttaaaactttagtgtgtgactgtgttttgttatggcttctgctat 391  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  44783417 gttaaaactttagtgtgtgactaggttttgttatggcttctgctat 44783372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 44789743 - 44789646
Alignment:
Q  329 gtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaa 428  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  44789743 gtaataaatggaattttgttaaaactttagtgtgtgactgtgctt--ttatggcttctgct-tcaatttaataatgtaatacatcctccaaacataacaa 44789647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 44783701 - 44783642
Alignment:
Q  7 tatcattgttgttttcatagttaagttaatatgtacatatcacaagtcatgattaaatta 66  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||    
T  44783701 tatcattgttgttttcatagttaagttaatttatacatatcacatgtcttgattaaatta 44783642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44614686 - 44614721
Alignment:
Q  1 aatatatatcattgttgttttcatagttaagttaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  44614686 aatatatatcattgttgttttcatagttaagttaat 44614721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44793883 - 44793848
Alignment:
Q  1 aatatatatcattgttgttttcatagttaagttaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  44793883 aatatatatcattgttgttttcatagttaagttaat 44793848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 29505328 - 29505175
Alignment:
Q  156 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat 255  Q
    ||||||||||||||||||||||| ||||||||| |||||| | |||||||||| ||||||| ||||||| |||  ||||||||| |||||||||||| ||    
T  29505328 ggttagcagtgtggagttcacactcttgactgtttggttaagagtaggaataggaaaggatgaataaatgaca--ttttgttaagactttagtgttttat 29505231  T
Q  256 tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctg 312  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  29505230 tgtg-tttgttaggctttcaatttcaagtttgacagtttttgtatggaaatcttctg 29505175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 29505547 - 29505387
Alignment:
Q  1 aatatatatcattgttgttttcatagttaagttaatatgtacatatcacaagtcatgattaaat-------tacttgtttgtaaggttttttcatgtact 93  Q
    |||||| ||||| || ||||||||||| |||||||| | ||||||||||| ||| |||| ||||       ||||||| | || | ||||||| ||||||    
T  29505547 aatatacatcatcgtagttttcatagtcaagttaatctatacatatcacatgtcctgatcaaatgattagttacttgtgtttatg-ttttttcttgtact 29505449  T
Q  94 aaaactgcactgatttggtgatgtttccaaatactaaaactaattcttatttttgcaggatc 155  Q
    |||| |||||||||||  |||  ||| ||| |||||||| ||||||||||||||||||||||    
T  29505448 aaaattgcactgattttatgacattttcaagtactaaaattaattcttatttttgcaggatc 29505387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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