View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_14 (Length: 478)
Name: NF5478_low_14
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Complemental strand, 33861958 - 33861503
Alignment:
| Q |
13 |
aatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatcttttcact |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861958 |
aatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatcttttcact |
33861860 |
T |
|
| Q |
113 |
tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861859 |
tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta |
33861760 |
T |
|
| Q |
213 |
atttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg |
312 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861759 |
attgcgttgagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg |
33861661 |
T |
|
| Q |
313 |
caaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag-----------aagtgg |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33861660 |
caaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtttaagtgg |
33861561 |
T |
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| Q |
402 |
tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaa |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861560 |
tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaa |
33861503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Original strand, 33918964 - 33919419
Alignment:
| Q |
13 |
aatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatcttttcact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918964 |
aatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatcttttcact |
33919062 |
T |
|
| Q |
113 |
tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919063 |
tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta |
33919162 |
T |
|
| Q |
213 |
atttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg |
312 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919163 |
attgcgttgagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg |
33919261 |
T |
|
| Q |
313 |
caaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag-----------aagtgg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33919262 |
caaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtttaagtgg |
33919361 |
T |
|
| Q |
402 |
tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaa |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33919362 |
tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaa |
33919419 |
T |
|
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