View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5478_low_15 (Length: 470)
Name: NF5478_low_15
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 22 - 452
Target Start/End: Original strand, 43452839 - 43453269
Alignment:
| Q |
22 |
caggccacgtacgtactgtacaatttacaaatgtaaaatataaatgtgaagtacttatagtaaaaacagtacgtaaaaattttaacctcgaagnnnnnnn |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43452839 |
caggccacgtacgtactgtacaatttacaaatgtaaaatgtaaatgtgaagtacttatagtaaaaacagtacgtaaaaattttaacctcgaagaaaaaaa |
43452938 |
T |
|
| Q |
122 |
caaaggaaaattttggagtgtggacagaaccaggtgctggtctgaaggtgcaacagaagtgttggtacgtaacgccttaaatgtcaaattttaacttaat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43452939 |
caaaggaaaattttggagtgtggacagaaccaggtgctgttctgaaggtgcaacagaagtgttggtacgtaacgccttaaatgtcaaattttaacttaat |
43453038 |
T |
|
| Q |
222 |
tttcactgttgttgcatgaatgcatcattccccatgtctcagaaaatcaggcttttaatacaggtcctgcttagcccattgtcttaaaagtgaagtgtta |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43453039 |
tttcactgttgttgcatgaatgcatcattccccatgtctcagaaaatcaggcttttaatacaggtcctgcttagcccattgtcttaaaagtgaagtgtta |
43453138 |
T |
|
| Q |
322 |
catttgcagatctagctggtgttgggaccatggcaaatgaatcctacaaaatacttccagaaaggaacttcaattattcaatattacgtccacctaacat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43453139 |
catttgcagatctagctggtgttgggaccatggcaaatgaatcctacaaaatacttccagaaaggaacttcaattattcaatattacgtccacctaacat |
43453238 |
T |
|
| Q |
422 |
aatgttaaccatttattctgctctttctgtg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43453239 |
aatgttaaccatttattctgctctttctgtg |
43453269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University