View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_19 (Length: 441)

Name: NF5478_low_19
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_19
NF5478_low_19
[»] chr7 (15 HSPs)
chr7 (14-425)||(29454440-29454857)
chr7 (263-420)||(29431340-29431497)
chr7 (346-424)||(29899025-29899103)
chr7 (15-82)||(29431715-29431782)
chr7 (346-417)||(29859102-29859173)
chr7 (176-226)||(29431547-29431597)
chr7 (375-420)||(29106494-29106539)
chr7 (378-423)||(29884949-29884994)
chr7 (100-144)||(29431641-29431685)
chr7 (375-425)||(29445984-29446034)
chr7 (110-146)||(29074482-29074518)
chr7 (375-407)||(29074741-29074773)
chr7 (110-146)||(29106217-29106253)
chr7 (376-424)||(29476669-29476717)
chr7 (383-423)||(29895157-29895197)
[»] chr1 (3 HSPs)
chr1 (264-425)||(4366829-4366987)
chr1 (375-420)||(39379409-39379454)
chr1 (365-425)||(17561089-17561149)
[»] chr4 (4 HSPs)
chr4 (375-412)||(3557403-3557440)
chr4 (375-421)||(3561305-3561351)
chr4 (375-421)||(3565421-3565467)
chr4 (375-407)||(1686646-1686678)
[»] chr2 (2 HSPs)
chr2 (112-144)||(18914121-18914153)
chr2 (116-144)||(18921311-18921339)
[»] chr3 (1 HSPs)
chr3 (111-144)||(3625187-3625220)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 29454857 - 29454440
Alignment:
Q  14 acagtgtcgttccctactccatacgccatttaattgagaacccttcattcacccattctgccattaatgataatgatgagtttgtca------actatca 107  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| | |||  ||||| |   | | ||| | |      |||||||    
T  29454857 acagtgtcgttccctactccattcgccgtttaatagagaacccttcattcacccattccgtcatcgatgatgactgttattttctaatggagaactatca 29454758  T
Q  108 tactatagttggttcctgcaatggattgatttgtttgtcaactttctttggagaagaaggttacaagttccgattatggaacccagccaccaggacaact 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  29454757 tactatagttggttcctgcaatggattgatctgtttgtcaactttctttggagaagatggttaccagttccgattatggaacccagccaccaggacaact 29454658  T
Q  208 aaagattttggttattttcatgatcgtggcagcagctctctaggcaacactaaccttttcaagttcaactttggctatcacaattcaactgatacctata 307  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  29454657 aaagattttggttattttcttgattgtggcagcagctctctaggcaacactaaccttttcaagttcaactttggctatgacaattcaactgatacctaga 29454558  T
Q  308 aagcggtggcgtcccgttaccatccagaacatcactgcagaagcaatgtcaaaattctaagtttgcatgataatgtttggagagatattgaaagtttccc 407  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29454557 aagcggtggcgtcccgttacgatccagaacatcactgcagaagcaatgtcaaaattctaagtttgcatgataatgtttggagagatattgaaagtttccc 29454458  T
Q  408 tgttgctcctcttcattt 425  Q
    ||||||||||||||||||    
T  29454457 tgttgctcctcttcattt 29454440  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 263 - 420
Target Start/End: Complemental strand, 29431497 - 29431340
Alignment:
Q  263 ttttcaagttcaactttggctatcacaattcaactgatacctataaagcggtggcgtcccgttaccatccagaacatca-ctgcagaagcaatgtcaaaa 361  Q
    |||||||||| |||||||| | | ||||| |||| || || ||||| | |||||||||||||||| ||||| || || | ||| ||||||||||||||||    
T  29431497 ttttcaagtttaactttggttttgacaatgcaaccgacacttataaggtggtggcgtcccgttacaatccaaaagatgaactg-agaagcaatgtcaaaa 29431399  T
Q  362 ttctaagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcctctt 420  Q
    || ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  29431398 ttttaagtttgagtgataatgtttggagagatattgaaagtttccctgttgttcctctt 29431340  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 29899025 - 29899103
Alignment:
Q  346 agaagcaatgtcaaaattctaagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcctcttcatt 424  Q
    ||||||||||| |||||||| |||||   ||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  29899025 agaagcaatgtgaaaattctcagttttggtgataatgtttggagagatattgaaagtttcccagttgttcctcttcatt 29899103  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 29431782 - 29431715
Alignment:
Q  15 cagtgtcgttccctactccatacgccatttaattgagaacccttcattcacccattctgccattaatg 82  Q
    |||||| |||||||||||||| | || |||||||||||||||||||||||||||||| | ||||||||    
T  29431782 cagtgttgttccctactccatgccccgtttaattgagaacccttcattcacccattccgacattaatg 29431715  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 417
Target Start/End: Original strand, 29859102 - 29859173
Alignment:
Q  346 agaagcaatgtcaaaattctaagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcct 417  Q
    ||||||||||| | |||||||||||||  |||||| |||||||||||||||||||||||||| |||| ||||    
T  29859102 agaagcaatgtgagaattctaagtttgggtgataacgtttggagagatattgaaagtttcccggttgatcct 29859173  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 29431597 - 29431547
Alignment:
Q  176 tccgattatggaacccagccaccaggacaactaaagattttggttattttc 226  Q
    |||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  29431597 tccgtttatggaacccagccaccaggacaactaaggattttggctattttc 29431547  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 29106494 - 29106539
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccctgttgctcctctt 420  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||    
T  29106494 tgataatgtttggagagatgttgaaagtttcccggttgatcctctt 29106539  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 29884949 - 29884994
Alignment:
Q  378 taatgtttggagagatattgaaagtttccctgttgctcctcttcat 423  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||    
T  29884949 taatgtttggagagatattgaaagttttccagttgttcctcttcat 29884994  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 29431685 - 29431641
Alignment:
Q  100 aactatcatactatagttggttcctgcaatggattgatttgtttg 144  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||    
T  29431685 aactatcatactatagttggttcttgcaacggattgatctgtttg 29431641  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 29446034 - 29445984
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccctgttgctcctcttcattt 425  Q
    |||||||||||||||| | ||| |||||||||| |||| ||||||||||||    
T  29446034 tgataatgtttggagacagattcaaagtttccccgttgttcctcttcattt 29445984  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 29074482 - 29074518
Alignment:
Q  110 ctatagttggttcctgcaatggattgatttgtttgtc 146  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  29074482 ctatagttggtacctgcaatggattgatctgtttgtc 29074518  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 29074741 - 29074773
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccc 407  Q
    ||||||||||||||||||| |||||||||||||    
T  29074741 tgataatgtttggagagatgttgaaagtttccc 29074773  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 29106217 - 29106253
Alignment:
Q  110 ctatagttggttcctgcaatggattgatttgtttgtc 146  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  29106217 ctatagttggtacctgcaatggattgatctgtttgtc 29106253  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 29476717 - 29476669
Alignment:
Q  376 gataatgtttggagagatattgaaagtttccctgttgctcctcttcatt 424  Q
    ||||||||||||||||| ||| |||||||||| |||| |||| ||||||    
T  29476717 gataatgtttggagagagattcaaagtttccccgttgttcctattcatt 29476669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 29895157 - 29895197
Alignment:
Q  383 tttggagagatattgaaagtttccctgttgctcctcttcat 423  Q
    ||||||||||||||||||||||||||| ||  |||||||||    
T  29895157 tttggagagatattgaaagtttccctgctgtccctcttcat 29895197  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 425
Target Start/End: Complemental strand, 4366987 - 4366829
Alignment:
Q  264 tttcaagttcaactttggctatcacaattcaactgatacctataaagcggtggcgtcccgttaccatccagaacatcactgcagaagcaatgtcaaaatt 363  Q
    |||||| ||||| ||||| | | |||||||||||||||| ||||| | ||||| |||||||||||||||| | || ||    ||||||| ||| |  |||    
T  4366987 tttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacag---agaagcattgtgaggatt 4366891  T
Q  364 ctaagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcctcttcattt 425  Q
    |||||| ||  |||||| ||||||||||||||||||||||| ||| ||| ||||||||||||    
T  4366890 ctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcattt 4366829  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 39379454 - 39379409
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccctgttgctcctctt 420  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||    
T  39379454 tgataatgtttggagaaatattgaaagtttcccggttgttcctctt 39379409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 17561149 - 17561089
Alignment:
Q  365 taagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcctcttcattt 425  Q
    ||||||||  |||||| ||||||||||||||| |||||||||| |||| ||||||| ||||    
T  17561149 taagtttgggtgataacgtttggagagatattcaaagtttcccggttgttcctcttgattt 17561089  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 412
Target Start/End: Original strand, 3557403 - 3557440
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccctgttg 412  Q
    |||||||||||||||| |||||||||||||||||||||    
T  3557403 tgataatgtttggagaaatattgaaagtttccctgttg 3557440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 3561351 - 3561305
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccctgttgctcctcttc 421  Q
    |||||||||||||||| ||||||||||||| ||| ||| ||||||||    
T  3561351 tgataatgtttggagaaatattgaaagttttcctattgttcctcttc 3561305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 3565421 - 3565467
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccctgttgctcctcttc 421  Q
    |||||||||||||||| |||||||||||||||| | || ||||||||    
T  3565421 tgataatgtttggagaaatattgaaagtttcccggctgttcctcttc 3565467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 1686678 - 1686646
Alignment:
Q  375 tgataatgtttggagagatattgaaagtttccc 407  Q
    |||||||||||||||| ||||||||||||||||    
T  1686678 tgataatgtttggagaaatattgaaagtttccc 1686646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 18914153 - 18914121
Alignment:
Q  112 atagttggttcctgcaatggattgatttgtttg 144  Q
    |||||||||||||||||||||||||||||||||    
T  18914153 atagttggttcctgcaatggattgatttgtttg 18914121  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 18921339 - 18921311
Alignment:
Q  116 ttggttcctgcaatggattgatttgtttg 144  Q
    |||||||||||||||||||||||||||||    
T  18921339 ttggttcctgcaatggattgatttgtttg 18921311  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 3625187 - 3625220
Alignment:
Q  111 tatagttggttcctgcaatggattgatttgtttg 144  Q
    ||||||||||||||||||||||||||| ||||||    
T  3625187 tatagttggttcctgcaatggattgatatgtttg 3625220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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