View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_2 (Length: 908)
Name: NF5478_low_2
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 396 - 753
Target Start/End: Original strand, 190767 - 191124
Alignment:
| Q |
396 |
catttgttgatggaagccagagaatcttcggatggcatcggaaaccggaagatgagcaaggttccgaaaggatacgttgccgtttatgttggaccggagt |
495 |
Q |
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| T |
190767 |
catttattaatggaagccagagaatcttcggatggcatcggaaaccggaagatgagcaaggttccgaaaggatacgttgccgtttatgttggaccggagt |
190866 |
T |
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| Q |
496 |
ttagaaggtttgtgattccaataaggttcttgagcatggctgaggtgaaggagttgatggatgatgtagctgaggagtttggttgtgattatcacgctga |
595 |
Q |
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| T |
190867 |
ttagaaggtttgtgattccaataaggttcttgagcatggctgaggtgaaggagttgatggatgatatagctgaggagtttggttgtgattatcacgctga |
190966 |
T |
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| Q |
596 |
tggtgctcttcatattccatgtgatgaagattattttcgcaatgttttgattaattgttttgcaacacaaggcagggtatcttctaagaatcataagatc |
695 |
Q |
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| T |
190967 |
tggtgctcttcatattccatgtgatgaagattattttcgcaatgttttgattaattgttttgcaacacaaggcagggtatcttctaagaatcataagatc |
191066 |
T |
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| Q |
696 |
aaacttggtaataagaatgccttgatttacagtcattaattaattcatataatcccct |
753 |
Q |
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| T |
191067 |
aaacttggtaataagaatgccttgatttacagtcattaattaattcatataatcccct |
191124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 190378 - 190741
Alignment:
| Q |
8 |
gagaagcataggctcacaatgatgaaccaattaattaatggttccccttcctcaaaactacatgcaaccaattccttattataaataaataaactaacat |
107 |
Q |
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| T |
190378 |
gagaaacataggctcacaatgatgaaccaattaattaatggttccccttcctcaaaactacatgcaaccaattccttattataaataaataaactaacat |
190477 |
T |
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| Q |
108 |
gtagtcgagcattcaaattttcaaccatatttctctctctaataaaattatcagttattgtatatattggttaagttccatt----gaaggggaggaaaa |
203 |
Q |
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| T |
190478 |
gtagtcgagcattcaaattttcaaccatatttctctctctaataaaattatcagttattgtatatattggttaagttccattgaaggaaggggaggaaaa |
190577 |
T |
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| Q |
204 |
ggtttacttttcctcttctatgtcactaaaatatttagatttacaaatcaataaataaatttgaaaatgaaagttggtgggattttcatatccacttcaa |
303 |
Q |
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| T |
190578 |
ggtttacttttcctcttctatgtcactaaaatatttagatttacaaatcaataaataaatttgaaaatgaaagttggtgggatttccatatccacttcaa |
190677 |
T |
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| Q |
304 |
agctggcaatgcctatcaatctcaatagcaaaactgcgtcataatattcatttcgccgttcaaa |
367 |
Q |
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| T |
190678 |
agctggcaatgcctatcaatctcaatagcaaaactgcgtcatattattcatttcgccgatcaaa |
190741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 796 - 891
Target Start/End: Original strand, 191144 - 191239
Alignment:
| Q |
796 |
atggggagtcttaattaattgattattagaatcatattcaattctcaaataatgtatatgatatgacagaaacatgcttttgtaaatagaatgtgt |
891 |
Q |
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| T |
191144 |
atggggagtcttaatttatttattattagaatcatattcaattctcaaataatgtatatgatatgacagaaacatgcttttgtaaatagaatgtgt |
191239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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