View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_20 (Length: 439)
Name: NF5478_low_20
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 33855074 - 33854651
Alignment:
| Q |
1 |
acccagaatgtaatagcttagtcatactatcataaagcacattgttaaatctattaaaattttgatcttatgagctttgatcattatcagtgnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |
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| T |
33855074 |
acccagaatgtaatagcttagtcatactatcataaagcacattgttaaatctattgaa-ttttgatcttatgagctttgat---tatcagtgtttaattt |
33854979 |
T |
|
| Q |
101 |
nnnnnnnnnnnnngtgatttaggaaaagaagaaatctcgttcaagatcaaataggtaagtttttaattgtgagagttattctttgacattattgagatat |
200 |
Q |
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| T |
33854978 |
tttattttattttgtgatttaggaaaagaagaaatctcgttcaagatcaaataggtaagtttttaattgtgag--ttattctttgacattattgagatat |
33854881 |
T |
|
| Q |
201 |
cagcaaatacacgttgttt-----------aatgactgtttttatgcgtaacagtgatgaagaggaagttattctagctagatgtcactatacagaggca |
289 |
Q |
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| T |
33854880 |
cagcaaatacacgttgttttgttcgtgtttaat-actgtttttatgcgtaacagtgatgaagaggaagttattctagctagatgtcactatacagaggca |
33854782 |
T |
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| Q |
290 |
caggttgatgagggtgtgatatacaaactttacgatgatgcatatgttcaagtaagtttgattgattgaagtattatgtttgagttctcatttattagtc |
389 |
Q |
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| T |
33854781 |
caggtcgatgagggtgtgatatacaaactttacgatgatgcatatgtgcaagtaagtttgattgattgaagtattatgtttgagttctcatttattagtc |
33854682 |
T |
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| Q |
390 |
tcatttttggtatttgtatacatgatcttat |
420 |
Q |
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| T |
33854681 |
tcatttcttgtatttgtatacatgatcttat |
33854651 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 28214211 - 28214284
Alignment:
| Q |
242 |
agtgatgaagaggaagttattctagctagatgtcactatacagaggcacaggttgatgagggtgtgatatacaa |
315 |
Q |
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||||||||||| |||||| ||| |||||||||||||||||||||||| | ||||||| |||||||| ||||| |
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| T |
28214211 |
agtgatgaagatgaagttcttcaagctagatgtcactatacagaggccaaagttgatggaggtgtgatctacaa |
28214284 |
T |
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