View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_21 (Length: 427)
Name: NF5478_low_21
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 41896564 - 41896975
Alignment:
| Q |
1 |
accaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896564 |
accaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataat |
41896663 |
T |
|
| Q |
101 |
agtaaatatgcattcaaatattttatgaagaatatgataaaaattgctaaatttatttatgagaaccgtattacggagaaagtaacgatatttgtaatca |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41896664 |
agtaaatatgcattcaaatactttatgaagaatatgataaaaattgctaaatttatttatgagaaacgtattacggagaaagtaacgatatttgtaatca |
41896763 |
T |
|
| Q |
201 |
gcggtccgagactttggaattgctttcttgtcagtgacacgagctctatggagaagaaatccgttaaggttcataataagcaatttcttcttaggtccga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41896764 |
gcggtccgagactttggaattgctttcttgtcagtgacacgagctctatggagaagaaatccattaaggttcataataagcaatttcttcttaggtccga |
41896863 |
T |
|
| Q |
301 |
gattcagcttctcaagagaaaggtccaattctggacttttgtgatcatcatggtcatcatgatcagcttcagagtctttgattttgatatttccatcact |
400 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896864 |
gattcagcttctcaagaaaaaggtccaattctggacttttgtga---------tcatcatgatcagcttcagagtctttgattttgatatttccatcact |
41896954 |
T |
|
| Q |
401 |
gcaactctcttcctttgcttc |
421 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
41896955 |
gcaactctctttctttgcttc |
41896975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 169 - 408
Target Start/End: Original strand, 41901773 - 41902013
Alignment:
| Q |
169 |
tattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttgtcagtgacacgagctctatggagaagaaatccgttaag |
268 |
Q |
| |
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||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
41901773 |
tattacgtagaaagtaaggatatttgtaatcagcagttcgagactttggaattgctttcttatcacaaacatgagctctatggagaagaaatccgttaag |
41901872 |
T |
|
| Q |
269 |
gttcataataagcaatttcttcttaggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgatc-atcatggtcatcatgatcagc |
367 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || |||||||||||||| | |||||||| | || ||| | | || |||||||||||||| |
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| T |
41901873 |
gttcataattagcaatttcttcttaggtccgagattaagtttctcaagagaaagaccaaattctgg-ttcttctgaacttttgtgatcatcatgatcagc |
41901971 |
T |
|
| Q |
368 |
ttc-agagtctttgattttgatatttccatcactgcaactct |
408 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
41901972 |
ttcaagagtctttgattttgatatttccatcactggaactct |
41902013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 158 - 418
Target Start/End: Original strand, 41893545 - 41893814
Alignment:
| Q |
158 |
tatgagaaccgtattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttgtcagtgacacgagctctatggagaaga |
257 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| ||| | | | ||||||| ||||||||| |
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|
| T |
41893545 |
tatgagaaatgtattacggagaaagtaacgatattcgtgatcagcagttcgagactttggaattgctttcttatcactaatatgagctctgtggagaaga |
41893644 |
T |
|
| Q |
258 |
aatccgttaaggttcataataagcaatttcttcttaggtccgagattcagcttctcaagagaaaggtccaa---------ttctggacttttgtgatcat |
348 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||||||||| | ||||||| |||||||||||||| |||| ||||| || ||||||||||| |
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| T |
41893645 |
aatccattaatgttcataatgagcaatttcttcttaggactatgattcagtttctcaagagaaagacccaactctagttcttctgaacatttgtgatcat |
41893744 |
T |
|
| Q |
349 |
catggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctcttcctttgc |
418 |
Q |
| |
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|| ||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||| |
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| T |
41893745 |
caaggtcaacatgattagcttcagagtctttgattttgatatttccgtcactgcaactctttttctttgc |
41893814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 421
Target Start/End: Complemental strand, 41828877 - 41828705
Alignment:
| Q |
249 |
tggagaagaaatccgttaaggttcataataagcaatttcttctta---ggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgat |
345 |
Q |
| |
|
|||||||| || || |||||||||| || |||||| |||||||| ||| | ||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
41828877 |
tggagaagtaaaccattaaggttcaaaacaagcaacttcttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttg---tttgtgat |
41828781 |
T |
|
| Q |
346 |
catcatggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctcttcctttgcttc |
421 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| || | ||||||||| |
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|
| T |
41828780 |
catcatggtcaacatgatcagcttcaaagtctttgattctgatatttccatcactgcaactttccttctttgcttc |
41828705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 249 - 421
Target Start/End: Original strand, 41885847 - 41886018
Alignment:
| Q |
249 |
tggagaagaaatccgttaaggttcataataagcaatttcttctta---ggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgat |
345 |
Q |
| |
|
|||||||| || || |||||||||| || |||||| |||||||| ||| | ||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
41885847 |
tggagaagtaaaccattaaggttcaaaacaagcaacttcttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttg---tttgtgat |
41885943 |
T |
|
| Q |
346 |
catcatggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctcttcctttgcttc |
421 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||| |
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|
| T |
41885944 |
catcatggtcaata-gatcagcttcagagtctttgattctgatatttccatcactgcaactttccttctttgcttc |
41886018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 41891834 - 41891943
Alignment:
| Q |
9 |
cccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataatagtaaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||| |||| |||||||| | ||| ||| || |
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|
| T |
41891834 |
cccacttcaaatctttctaagcagaatttcataaattcttcagtaaatggtctcttgtaacctttaacacagttcagaaaataataatcaatgataagta |
41891933 |
T |
|
| Q |
109 |
tgcattcaaa |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
41891934 |
tgcattcaaa |
41891943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 34453812 - 34453742
Alignment:
| Q |
2 |
ccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
72 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34453812 |
ccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
34453742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 41829129 - 41829059
Alignment:
| Q |
2 |
ccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
72 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41829129 |
ccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41829059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 41885583 - 41885653
Alignment:
| Q |
2 |
ccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
72 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41885583 |
ccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41885653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 41901605 - 41901660
Alignment:
| Q |
9 |
cccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
64 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41901605 |
cccacttcaaatctttccaagcagaatttaataaattcttcgctaaatggcctctt |
41901660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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