View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_25 (Length: 402)

Name: NF5478_low_25

Description: NF5478

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5478_low_25

[»] chr2 (1 HSPs)

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 71; E-Value: 5e-32

Query Start/End: Original strand, 292 - 383

Target Start/End: Original strand, 7468793 - 7468888

Alignment:

Q	292	aatcacccttcattttgggtttat----tcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaattgagtgtccaatg	383	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7468793	aatcacccttcattttgggtttatatattcagcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagatattgagtgtccaatg	7468888	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 130 - 190

Target Start/End: Complemental strand, 9455062 - 9455002

Alignment:

Q	130	cctcctcatggtggtcctcatgagatctaactttgtcgttatcttcctcctttgtattatc	190	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|
T	9455062	cctcctcatggtggtcctcgtgagattaaacattatcgttatcttcctcctctgtcttatc	9455002	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 32; E-Value: 0.000000009

Query Start/End: Original strand, 286 - 369

Target Start/End: Original strand, 8304253 - 8304336

Alignment:

Q	286	tagaagaatcacccttcattttgggtttattcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaa	369	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	8304253	tagaataatcacccttcaatttggctttatccggcttcaccctatcctcattgttctctgggtgcaatttgttgcgaagagaaa	8304336	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]