View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_26 (Length: 385)

Name: NF5478_low_26
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_26
NF5478_low_26
[»] chr3 (5 HSPs)
chr3 (97-268)||(49976699-49976870)
chr3 (33-101)||(49976589-49976657)
chr3 (292-340)||(49976870-49976918)
chr3 (331-370)||(49976922-49976961)
chr3 (301-332)||(32998928-32998959)
[»] chr6 (1 HSPs)
chr6 (305-340)||(33771458-33771493)
[»] chr8 (4 HSPs)
chr8 (305-340)||(27709324-27709359)
chr8 (307-340)||(27710058-27710091)
chr8 (304-336)||(13544545-13544577)
chr8 (304-336)||(13679896-13679928)
[»] chr2 (1 HSPs)
chr2 (305-336)||(25331914-25331945)
[»] chr1 (1 HSPs)
chr1 (305-340)||(31202195-31202230)
[»] chr4 (1 HSPs)
chr4 (307-336)||(16499114-16499143)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 49976699 - 49976870
Alignment:
Q  97 cttaacacttctcgatttttgttgacctctgtaaacctgaaaaagattaacctatcttgtattcagttgttattgatttgactaaccttcatttgactga 196  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  49976699 cttaacacttctcgatttttgttgacctatgtaaacctgagaaagattaacctatcttgtattcagttgttattgattttactaaccttcgtttgactga 49976798  T
Q  197 ctataagaaattcgggtgtttaccgttctccgttaacaacttaattacttttaggtgtacacaacactcaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  49976799 ctataagaaattcgggtgtttaccgttctccgttaacaacttaattacttttaggtgtacagagcactcaat 49976870  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 49976589 - 49976657
Alignment:
Q  33 aaattttaaagttttatagaatttttctcaagtcgctcaaaatgggtctctgtgcaaatagttgcttaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  49976589 aaattttaaagttttatagaatttttctcaagtcgctcaaaatggatctctgtgcaaatagttacttaa 49976657  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 49976870 - 49976918
Alignment:
Q  292 ttacctatatttttagagaaatgctagggtcacacccactaacacactc 340  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49976870 ttacctatatttttagagaaatgctagtgtcacacccactaacacactc 49976918  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 49976922 - 49976961
Alignment:
Q  331 taacacactcaataataatcctccataccatcaacatttt 370  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  49976922 taacacactcaataataatcctccatgccatcaacatttt 49976961  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 332
Target Start/End: Original strand, 32998928 - 32998959
Alignment:
Q  301 tttttagagaaatgctagggtcacacccacta 332  Q
    ||||||||||||||||||||||||||||||||    
T  32998928 tttttagagaaatgctagggtcacacccacta 32998959  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 33771493 - 33771458
Alignment:
Q  305 tagagaaatgctagggtcacacccactaacacactc 340  Q
    ||||||||||||||||||||||||||||||||||||    
T  33771493 tagagaaatgctagggtcacacccactaacacactc 33771458  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 27709324 - 27709359
Alignment:
Q  305 tagagaaatgctagggtcacacccactaacacactc 340  Q
    |||||||||||||||||||||||| |||||||||||    
T  27709324 tagagaaatgctagggtcacaccctctaacacactc 27709359  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 27710091 - 27710058
Alignment:
Q  307 gagaaatgctagggtcacacccactaacacactc 340  Q
    |||||||||||||||||||||| |||||||||||    
T  27710091 gagaaatgctagggtcacaccctctaacacactc 27710058  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 13544545 - 13544577
Alignment:
Q  304 ttagagaaatgctagggtcacacccactaacac 336  Q
    |||||||||||||||| ||||||||||||||||    
T  13544545 ttagagaaatgctaggctcacacccactaacac 13544577  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 13679928 - 13679896
Alignment:
Q  304 ttagagaaatgctagggtcacacccactaacac 336  Q
    |||||||||||||||| ||||||||||||||||    
T  13679928 ttagagaaatgctaggctcacacccactaacac 13679896  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 25331914 - 25331945
Alignment:
Q  305 tagagaaatgctagggtcacacccactaacac 336  Q
    ||||||||||||||||||||||||||||||||    
T  25331914 tagagaaatgctagggtcacacccactaacac 25331945  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 31202195 - 31202230
Alignment:
Q  305 tagagaaatgctagggtcacacccactaacacactc 340  Q
    |||||||||||||||||||||||| |||||||||||    
T  31202195 tagagaaatgctagggtcacaccctctaacacactc 31202230  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 16499114 - 16499143
Alignment:
Q  307 gagaaatgctagggtcacacccactaacac 336  Q
    ||||||||||||||||||||||||||||||    
T  16499114 gagaaatgctagggtcacacccactaacac 16499143  T

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