View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_29 (Length: 366)
Name: NF5478_low_29
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 36590909 - 36591256
Alignment:
| Q |
1 |
aaacatgatcatcccagaaataggcaaagcaaatccagttccagtctccaattgtgatgtgggtgcgatctctgaatcttgtgcaacaatgtttgtcacg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36590909 |
aaacattatcatcccagaaataggcaaagcaaatccagttccagtctccaattgtgatgtgggtgcgatctccgaatcttgtgcaacaatgtttgtcacg |
36591008 |
T |
|
| Q |
101 |
caaaacaagcctataaccattatcaacattaaaaactgaaatgcagaggcaccaaatgttgccatttccacaaaatatcttatgttatgtcactctaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36591009 |
caaaacaagcctataaccattatcaacattaaaaactgaaatgcagaggcaccaaatgttgccatttccacaaaatatcttatgttatgtcactctaata |
36591108 |
T |
|
| Q |
201 |
gaaaatgggactgaaaaggttatattggttgggaaaatgaattgtacaatgagagagtcaagagttgagctatatatatagaattttgttaggtgtacgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36591109 |
gaaaatgggactgaaaaggttatattggttgggaaaatgaattgtacaataagagagtcaagagttgagctatatatatagaattttgttaggtgtacgt |
36591208 |
T |
|
| Q |
301 |
tattataagattaagaacattattttgaagttggtaagtggtacatta |
348 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36591209 |
tattataagattaagatcattattttgaagttggtaagtggtacatta |
36591256 |
T |
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