View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_30 (Length: 359)
Name: NF5478_low_30
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_30 |
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| [»] scaffold0468 (1 HSPs) |
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| [»] scaffold0183 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 3191880 - 3192197
Alignment:
| Q |
12 |
aatcatttttatgagatcaccacatagatgctttctccaagattctcaaatcactacttgtaataaaaa-ttttaatagagaagtcttctatccaacgta |
110 |
Q |
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| T |
3191880 |
aatcatttttatgagatcatcacatagatgctttctccaagattctcaaatcactacttctaataaaaacttttaatagagaagtcttctatccaacgta |
3191979 |
T |
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| Q |
111 |
agta-ttaccaaacttgcatgataggtttccaacaacattatttcaattccacttgttagaaaa-aatatattttctaatgtcgcaataaaaaagaacat |
208 |
Q |
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| T |
3191980 |
agaaattaccaaacttgcatgataggtttccaacaacattatttcaattccacttgttagaaaaaaatatattttctaatgtcccaataaaaaagaacat |
3192079 |
T |
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| Q |
209 |
tattcaaggtatatccttatttgtatttcacccccattttaaaacaaactaacnnnnnnnccttgcaaattacatgctcaagaggtgtatatgtgtatac |
308 |
Q |
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| T |
3192080 |
tattcaaggtatatccttatttgtattttacccccattttaaaacaaactaacaaaaaaaccttgcagattacatgctcaagatgtgtgtatatgtatac |
3192179 |
T |
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| Q |
309 |
tttgtcttttcattcaaa |
326 |
Q |
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| T |
3192180 |
tttgtgttttcattcaaa |
3192197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 3196110 - 3196159
Alignment:
| Q |
16 |
atttttatgagatcaccacatagatgctttctccaagattctcaaatcac |
65 |
Q |
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| T |
3196110 |
atttttatgagatcagcacatagatgctttctccaagattctcaaatcac |
3196159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 3196263 - 3196319
Alignment:
| Q |
179 |
attttctaatgtcgcaataaaaaagaacattattcaaggtatatccttatttgtatt |
235 |
Q |
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| T |
3196263 |
attttccaatgtcccaataaaaaagaacattattcaaggtacatccttgtttgtatt |
3196319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 11037 - 11088
Alignment:
| Q |
275 |
aaattacatgctcaagaggtgtatatgtgtatactttgtcttttcattcaaa |
326 |
Q |
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| T |
11037 |
aaattacatgctcaagatgtgtatatatgtatactttgtgttttcactcaaa |
11088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 17856529 - 17856573
Alignment:
| Q |
275 |
aaattacatgctcaagaggtgtatatgtgtatactttgtcttttc |
319 |
Q |
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| T |
17856529 |
aaattacatgctcaagatgtgtatatatgtatactttgtgttttc |
17856573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 11155 - 11117
Alignment:
| Q |
275 |
aaattacatgctcaagaggtgtatatgtgtatactttgt |
313 |
Q |
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| T |
11155 |
aaattacatgctcaagatgtgtatatatgtatactttgt |
11117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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