View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_31 (Length: 355)
Name: NF5478_low_31
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 101 - 334
Target Start/End: Original strand, 36724252 - 36724485
Alignment:
| Q |
101 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
|
| Q |
201 |
attatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaatatgttttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36724352 |
attatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgttaacatcacaaagaggagagaaccaatatgttttt |
36724451 |
T |
|
| Q |
301 |
gtaaaaataaagtctcgttcgtcattgcagatac |
334 |
Q |
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|||||||||||||||| | ||||||||||||||| |
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| T |
36724452 |
gtaaaaataaagtctcatgcgtcattgcagatac |
36724485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 59 - 301
Target Start/End: Complemental strand, 712314 - 712072
Alignment:
| Q |
59 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
158 |
Q |
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|||||||||||| |||||||||| ||||||| | ||||| |||| |||||| ||| |||||| |||| |||||||| | |||||| || | |||||| |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
|
| Q |
159 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcc |
258 |
Q |
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|| |||||||||| | ||| | ||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||| |||||| ||| | | ||||| |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccattccaaagtcgtatgaaaagaaactccttcc |
712115 |
T |
|
| Q |
259 |
cctatgtcaacatcacaaagaggagagaaccaatatgtttttg |
301 |
Q |
| |
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| T |
712114 |
cctatgtcaacatcacaaagaggagagaaccaatatgtttttg |
712072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 36723784 - 36723895
Alignment:
| Q |
3 |
tagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagttttgaaatctactatgaaataac |
102 |
Q |
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||||||||||||||||||||||||||||||| ||||||| | |||||| |||||| |||||||||||| || |||||||||||||||||||||||||||| |
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| T |
36723784 |
tagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagttttgaaatctactatgaaataac |
36723883 |
T |
|
| Q |
103 |
tgtctacaagca |
114 |
Q |
| |
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|||||||||||| |
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| T |
36723884 |
tgtctacaagca |
36723895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 717577 - 717269
Alignment:
| Q |
7 |
attatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagttttgaaatctactatgaaataactgt |
105 |
Q |
| |
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|||||||||| |||| ||||||||||| | || | | ||||||| || || |||||||||||| |||||||||||||||||||| || ||||| ||| |
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| T |
717577 |
attatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgt |
717478 |
T |
|
| Q |
106 |
ctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgtattat |
205 |
Q |
| |
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||||| || ||||||| |||| |||||||| | ||||| || | | |||||| |||||| ||| | ||| | ||||||||| |||||| ||||| |
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| T |
717477 |
ctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattat |
717378 |
T |
|
| Q |
206 |
caaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaatatgtttttgtaaa |
305 |
Q |
| |
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|||||||||||| ||||||||||| |||| |||||| ||| || | |||||||||||| ||||||||||||||||||||||||| || |||||| || |
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| T |
717377 |
caaattgaaggtgtgatgtccacttcaaaatcgtatgtaaaccaactacttcccctatgttaacatcacaaagaggagagaaccaagatttttttgcaag |
717278 |
T |
|
| Q |
306 |
aataaagtc |
314 |
Q |
| |
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|| |||||| |
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| T |
717277 |
aacaaagtc |
717269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 14541248 - 14541058
Alignment:
| Q |
59 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
158 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
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| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
|
| Q |
159 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatca |
249 |
Q |
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|| |||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtccactccaaagccgtatgcaaatca |
14541058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 2087537 - 2087632
Alignment:
| Q |
192 |
aaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaa |
291 |
Q |
| |
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||||||| | |||||||||||||||||||||||||| | ||||| ||||||||| |||||| || || ||||||||||||||||||||||||||| |
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| T |
2087537 |
aaaatctattttatcaaattgaaggtctgatgtccattgcaaagttgtatgcaaa----ctgcttctccaatatcaacatcacaaagaggagagaaccaa |
2087632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 36474068 - 36474006
Alignment:
| Q |
229 |
tccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaa |
291 |
Q |
| |
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|||| ||||||||||||| | |||||||||||| ||||||||||||||||| || |||||| |
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| T |
36474068 |
tccagagccgtatgcaaacccattgcttcccctatatcaacatcacaaagaggggaaaaccaa |
36474006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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