View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_33 (Length: 344)
Name: NF5478_low_33
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 13333320 - 13332990
Alignment:
| Q |
1 |
ttgtagtagtgttgtgaatgatgcaaagagcaaaggggttaatccatctatatataggctttttgtatttggattttataaggttgnnnnnnngcagaat |
100 |
Q |
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| T |
13333320 |
ttgtagtagtgttgtgaatgatgcaaagagcaaaggggttaatccatctatatataggctttttgtatttggattttataaggttgtttttttgcagaat |
13333221 |
T |
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| Q |
101 |
aattattaatattggtaaaactaatgcaacaatattgtttgcatgcacaccagtactttgttagtgtgactattgatataatattttcttagttattata |
200 |
Q |
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| T |
13333220 |
aattattaatattggtaaaactaatgcaacaatattgtttgcatgcacaccagtactttgttggtgtgactattgatataatattttcttaattattata |
13333121 |
T |
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| Q |
201 |
tagattagttacaaaatatgaattatagattcattgtataaattagcatgatcaatatgttgtgcaaagtgagttagtagtctcacattaaatgaaaatg |
300 |
Q |
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| T |
13333120 |
tagataagttacaaaatatgaattatagattcatcatataaattagcatgatcaatatgttgtgcaaagtgagttagaagtctcacattaaatgaaaatg |
13333021 |
T |
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| Q |
301 |
tgaatgttgagcaataaaagacttatatatg |
331 |
Q |
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| T |
13333020 |
tgaatgttgagcaataaaagacttatatatg |
13332990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 13308147 - 13308081
Alignment:
| Q |
10 |
tgttgtgaatgatgcaaagagcaaaggggttaatccatctatatataggctttttgtatttggatttt |
77 |
Q |
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| T |
13308147 |
tgttgtgtatgatgcatatagcaaagggattagtccatctatatataggc-ttttgtatttcgatttt |
13308081 |
T |
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