View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_35 (Length: 340)
Name: NF5478_low_35
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 8061316 - 8061007
Alignment:
| Q |
17 |
aatatagtatatagagaaaacctgaggaatgtcatgaccccgtcagtccctaaagagatctgctgacctcgacagggatgatccctagtactacatatca |
116 |
Q |
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| T |
8061316 |
aatatagtatatatagaaaacctgaaaaatgccatgaccccgtcagtccttgaagagatctgatgacctcgacagggatgatccctagtactacatatca |
8061217 |
T |
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| Q |
117 |
ctcaataattagaaaatcagagctatatagttctcttagcgttatgggatgtgaggaagaagaagtgaatgaatcttgatgatcaagatccccttattta |
216 |
Q |
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| T |
8061216 |
ctcaataattagaaaattagagctatatagttctcttgacgttatggaatgggaggaagaagaagtgaatgaatcgtgatgatcaagat-cccttattta |
8061118 |
T |
|
| Q |
217 |
tatagttcaatactagaagcagtggatgagtagagagtggaggatccgggggtctcccactactccacctcttctagacttaatcaaagcctaatgtgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
8061117 |
tatagttcaatactagaagcagtggatgagtagagagtggaggatcctggggtctcccactactccacctcttctagacttaatcgaagcttaatgtgtt |
8061018 |
T |
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| Q |
317 |
ttatataagaa |
327 |
Q |
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||||||||||| |
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| T |
8061017 |
ttatataagaa |
8061007 |
T |
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