View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_36 (Length: 337)
Name: NF5478_low_36
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 28790268 - 28790051
Alignment:
| Q |
13 |
aatatcctaaatcctaaatacatagtccaaattatttccattaattnnnnnnnctccaatattaaatcattaatcaatatatata--acattggttgttt |
110 |
Q |
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| T |
28790268 |
aatatcctaaatcctaaatacatagtccaaattatttccattaattaaaaaaactccaatattaaatcattaatcaatatatatataacattggttgttt |
28790169 |
T |
|
| Q |
111 |
tgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggttaagctttcttactgaagaatttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28790168 |
tgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggttaagctttcttactgaagaatttt |
28790069 |
T |
|
| Q |
211 |
gcatagtttgaaatggaa |
228 |
Q |
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|||||||||||||||||| |
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| T |
28790068 |
gcatagtttgaaatggaa |
28790051 |
T |
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