View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_37 (Length: 336)
Name: NF5478_low_37
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 53493206 - 53492989
Alignment:
| Q |
1 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53493206 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattg |
53493107 |
T |
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| Q |
101 |
taattattttatactcttgattagctagctatagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53493106 |
tacttattttatactcttgattagctagctatagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaa |
53493007 |
T |
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| Q |
201 |
ctacgctttcttcatacat |
219 |
Q |
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|||||| |||||||||||| |
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| T |
53493006 |
ctacgc-ttcttcatacat |
53492989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16072363 - 16072156
Alignment:
| Q |
1 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattg |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
16072363 |
tgatatttctggtttatatattctgagaccatctgcagtagagatatgggagactttgcaagtatgtttctcaacgatttgaatgcatttatatatattg |
16072264 |
T |
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| Q |
101 |
taattattttatactcttgattagctagctatagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | || ||||||| |||||||||||| ||||||||| ||| |
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| T |
16072263 |
tacttattttatactcttgattagctagctatggagttgatgcagaataaataaaatttatgattctttccaaatggtgatgttttagtttttggtaaaa |
16072164 |
T |
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| Q |
201 |
ctacgctt |
208 |
Q |
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|||||||| |
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| T |
16072163 |
ctacgctt |
16072156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 53501007 - 53500922
Alignment:
| Q |
1 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgc |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53501007 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaacgatttgaatgc |
53500922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 53492941 - 53492848
Alignment:
| Q |
233 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccctatg |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53492941 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctacttccctatg |
53492848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 53500892 - 53500803
Alignment:
| Q |
233 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccc |
322 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53500892 |
gctgagagttgctttcatatttcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctacttccc |
53500803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 16072095 - 16072002
Alignment:
| Q |
233 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccctatg |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| |||||||||||||||| |
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| T |
16072095 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttaatccagagataaagaaaatgaatgttgagagctgctacttccctatg |
16072002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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