View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_38 (Length: 333)
Name: NF5478_low_38
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 15656668 - 15656949
Alignment:
| Q |
21 |
aatcttcaccgtgttcaacagagaaaacaagatgtgccggaagagtttgaacatcattgttgctattaaccggaagaggagcttgctcggatgaaagttg |
120 |
Q |
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| T |
15656668 |
aatcttcaccgtgttcgacagagaaaacaggatgtgccgaaagagtttgaacatcattgttgctattaaccagaagaggagcttgctcagatgaaagttg |
15656767 |
T |
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| Q |
121 |
tacatctgcatgctctgctagttccaagataggtatagtaagccgaggtaaattaccttgaggaattggttctg-aaaaatcatgcaaattgttgggagt |
219 |
Q |
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| T |
15656768 |
tacatttgca-----tgctagttccaagataggttgagtaagccgaggtaaattaccttgaggaa-----tctgaaaaaatcatgcaaattgttgggagt |
15656857 |
T |
|
| Q |
220 |
aggacctgctgcgtcgttgtgcgggacgatttcatgggaggatggctggggggcagcagctcttgtattatcattggggatggcagctgttg |
311 |
Q |
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| T |
15656858 |
aggacctgctgcgtcgttgtgcgggacgatttcatgggaggatggctggggggcagcagctgttgtattatcattggggatggcagctgttg |
15656949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 17636139 - 17635832
Alignment:
| Q |
21 |
aatcttcaccgtgttcaacagagaaaacaagatgtgccggaagagtttgaacatcattgttgctattaaccggaagaggagcttgctcggatgaaagttg |
120 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || | ||||||| | ||||||||||||||| |
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| T |
17636139 |
aatcttcaccatgttcaacagagaaaacaagatgtgccggaagagtttgaacttcattgtttctattagccagcagaggagttgtctcggatgaaagttg |
17636040 |
T |
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| Q |
121 |
tacatctgcatgctctgctagttccaagataggtatagtaagccgaggtaaattaccttgaggaattggttctgaaaaatcatgc-aaattgttgggagt |
219 |
Q |
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| T |
17636039 |
tacatttgcatgttctgctagttccaagacaggtatagcaagccgaggtaaattaccttgaggaattggttctaaaaaatctggcaaaattgttggtagt |
17635940 |
T |
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| Q |
220 |
aggacctgctgcgtcgttgtgcgggacgatttcatgggag---------gatggctggggggcagcagctcttgtattatcattggggatggcagctgtt |
310 |
Q |
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||||||| ||| ||| | || ||||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||||||| | ||| |
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| T |
17635939 |
gggacctgttgcttcgctatgggggacagtttcatgggaggtggcagctgatggctgcggatcatcagctgttgtattatcattggggatggcatccgtt |
17635840 |
T |
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| Q |
311 |
ggtggggg |
318 |
Q |
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||| |||| |
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| T |
17635839 |
ggtagggg |
17635832 |
T |
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