View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5478_low_4 (Length: 776)
Name: NF5478_low_4
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_4 |
 | |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 659; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 10 - 758
Target Start/End: Original strand, 16589203 - 16589964
Alignment:
| Q |
10 |
agtagcataggcctgttaaatacagaagtttgtcaaatacatttatctacattgaaatttgaatgagatgcaacaag-------------ttatgacatg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
16589203 |
agtagcataggcctgttaaatacagaagtttgtcaaatacatttatctacattgaaatttgaatgagatgcaacaagttatgcatgcaagttatgacatg |
16589302 |
T |
|
| Q |
97 |
taccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16589303 |
taccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtggcaatagccatccaaaaacccgtactaaggccgaataatgtgttgaaa |
16589402 |
T |
|
| Q |
197 |
atgacactgaaatcaagtaaaacatgaacaattgtgggagaaatcacacaacataactaaaagaaagaatctcattcattgttattagatactactaaca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
16589403 |
atgacactgaaatcaagtaaaacatgaacaattgtgggagaaatcacacaacataacttaaagaaagaatcgcattcattgttattagatactacttaca |
16589502 |
T |
|
| Q |
297 |
ctgcgataatccccattattaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaaga |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16589503 |
ctgcgataatccccattattaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaaga |
16589602 |
T |
|
| Q |
397 |
tcctaaaaacattttcaatcataatcaatgaagaacttataacaatgataaaagacttaattgaat-ggaaatactaaaaataatcttaccaatataacc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
16589603 |
tcctaaaaacattttcaatcataatcaatgaagaacttataacaatgataaaagacttaaatgaatgggaaatactaaaaataatcttaccaatataacc |
16589702 |
T |
|
| Q |
496 |
agcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgagcattgtattattgaatcaatcag |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
16589703 |
agcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgagcattgtattattgaatcaaccag |
16589802 |
T |
|
| Q |
596 |
tttagagttgaatactaatcaaatatttcagtttttgagtatttcactagatatgacaaaacaaaaggaaaatacttaagaaacttgaaatttacattat |
695 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16589803 |
tttagagttgaatactaatcgaatatttcagtttttcagtatttcac-aaatatgacaaaacaaaaggaaaatacttaagaaacttgaaatttacattat |
16589901 |
T |
|
| Q |
696 |
ggaattaattgtttgtaccatatacaagaatgatgattaaacagtgaagtgatactcattcat |
758 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16589902 |
ggaatttattgtttgtaccatacacaagaatgatgattaaacagtgaagtgatactcattcat |
16589964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 96 - 572
Target Start/End: Original strand, 16529295 - 16529773
Alignment:
| Q |
96 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
195 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
16529295 |
gtaccttaactggcccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaataacccgtactaaggccaaataatgtgttgaa |
16529394 |
T |
|
| Q |
196 |
aatgacactgaaatcaagtaaaacatgaacaattgtgggagaaatcacacaacataactaaaagaaagaatctcattcatt-----gttattagatacta |
290 |
Q |
| |
|
||||||||||||||||||| ||||| || ||| || | ||||||||| ||||| | | ||||||| | | |||| | || || ||||||| |
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| T |
16529395 |
aatgacactgaaatcaagt-taacatcaatgattatgagcgaaatcacaaaacatgatttaaagaaaacacccatttcaatattcatttgttggatacta |
16529493 |
T |
|
| Q |
291 |
ctaacactgcgataatccccattattaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgta |
390 |
Q |
| |
|
|| ||||||| || || ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| | |
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|
| T |
16529494 |
cttacactgcaatgattcccatgattataacaggttttcgaccatagcgatctgaaaccattccccatagtacagacgtcaaacatcttccaagcatgaa |
16529593 |
T |
|
| Q |
391 |
tgaagatcctaaaaacattttcaatcataatcaatgaagaacttataacaatgataaaagacttaattgaatggaaatactaaaa-----ataatcttac |
485 |
Q |
| |
|
||||||||| | | |||||||| ||| |||||||||||| |||| ||||||||| | ||| |||||||||||||| | |||||||| |
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|
| T |
16529594 |
cgaagatcct-acagcattttcagtca-cttcaatgaagaacatatatcaatgataatattctt-----cttggaaatactaaaaaaaagaaaatcttac |
16529686 |
T |
|
| Q |
486 |
caatataaccagcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgag |
572 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| || |||| ||| |||||||||| |
|
|
| T |
16529687 |
caacataaccagcataataacttatatcagcttcttcttttgcaacgttgaaatcccttacctgaacataagagtttcattattgag |
16529773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 320 - 582
Target Start/End: Original strand, 16521038 - 16521300
Alignment:
| Q |
320 |
acaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaagatcctaaaaacattttcaatcata |
419 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||| ||||||||| |||| |||||| | |||||||||||| || |
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|
| T |
16521038 |
acaggttttcgaccatagcgatcagaaaccattccccataatacagatgtcaatgttctaccaagcatgaatgatgatcct-acaacattttcaattatc |
16521136 |
T |
|
| Q |
420 |
atcaatgaagaacttataacaatgataaaagacttaattgaatggaaatactaaaaataatcttaccaatataaccagcatagtaactaatatcagcttc |
519 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||| || ||||| || |||||||||||||||| | ||| ||||||||||| ||||||||||| || |
|
|
| T |
16521137 |
accaatgaacaacttataacaatgataaaagacttcgaagagtggaagtattaaaaataatcttacctacatagccagcatagtagctaatatcagcctc |
16521236 |
T |
|
| Q |
520 |
ttcttttgcaacattgaagtcccttacct-aaaaataaatgttgcattattgagcattgtatta |
582 |
Q |
| |
|
|||||||| || || |||||||||| ||||||||| ||||||| || ||| ||| ||||| |
|
|
| T |
16521237 |
ggattttgcaattttaaaatcccttacctgaaaaataaacgttgcatcatcgaggattatatta |
16521300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 16520780 - 16520896
Alignment:
| Q |
96 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
195 |
Q |
| |
|
||||||| |||||||||| | ||||||||| ||| | ||||||||| |||| || |||||||||||||| |||||||||||| || | |||||||| |
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|
| T |
16520780 |
gtacctttactggtccaattgcaccatttaaagttcccaaaagaaatcttgtgataacagccatccaaaaactcgtactaaggccaaaaagtgtgttgag |
16520879 |
T |
|
| Q |
196 |
aatgacactgaaatcaa |
212 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
16520880 |
aacgacactgaaatcaa |
16520896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 26370706 - 26370826
Alignment:
| Q |
96 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
195 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||| |||| ||| | || || |||||||||||||| || |||||||| |||| ||||||||| |
|
|
| T |
26370706 |
gtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaa |
26370805 |
T |
|
| Q |
196 |
aatgacactgaaatcaagtaa |
216 |
Q |
| |
|
||||| |||||||| |||||| |
|
|
| T |
26370806 |
aatgatactgaaataaagtaa |
26370826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 180; Significance: 9e-97; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 96 - 585
Target Start/End: Original strand, 121 - 607
Alignment:
| Q |
96 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
121 |
gtaccttaactggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactgaggccaaataatgtgttgaa |
220 |
T |
|
| Q |
196 |
aatgacactgaaatcaagtaaaacatgaacaattgtgggagaaatcacacaacataactaaaagaaaga---atctcattcat-tgttattagatactac |
291 |
Q |
| |
|
||||||||||||||||||| |||||| || |||| || |||| ||| |||||||||||| ||||||| | || ||| | | | || ||||||||||| |
|
|
| T |
221 |
aatgacactgaaatcaagt-aaacatcaataattatgagagacatcccacaacataacttaaagaaacatccatttcaatattcttttgttagatactac |
319 |
T |
|
| Q |
292 |
taacactgcgataatccccattattaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtat |
391 |
Q |
| |
|
| ||||||| || || ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| | |
|
|
| T |
320 |
ttacactgcaatgattcccatgattataacaggttttcgaccatagcgatctgaaaccattccccatagtacagacgtcaaacatcttccaagcatgaac |
419 |
T |
|
| Q |
392 |
gaagatcctaaaaacattttcaatcataatcaatgaagaacttataacaatgataaaagacttaattgaatggaaatactaaaaataa-----tcttacc |
486 |
Q |
| |
|
||||||||| | | |||||||| ||| |||||||||||| |||| ||||||||| | ||| ||||||||||||||| || ||||||| |
|
|
| T |
420 |
gaagatcct-acagcattttcagtca-cttcaatgaagaacatatatcaatgataatattctt-----cttggaaatactaaaaaaaagaaattcttacc |
512 |
T |
|
| Q |
487 |
aatataaccagcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgagcattgtattattg |
585 |
Q |
| |
|
|| ||||||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||| || |||||||||||| |
|
|
| T |
513 |
aacataaccagcgtaataacttatatcagcttcttcttttgcaacgttgaaatcccttacctgaaaata----ttgcattattaaggattgtattattg |
607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 2606639 - 2606519
Alignment:
| Q |
96 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
195 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||| |||| ||| | || || |||||||||||||| ||| |||||||| |||| ||||||||| |
|
|
| T |
2606639 |
gtaccttcattggtccaagcaaaccatttaaacatccaagaaaaaaccgcgttgtaacagccatccaaaaactcgtgctaaggccaaatagtgtgttgaa |
2606540 |
T |
|
| Q |
196 |
aatgacactgaaatcaagtaa |
216 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
2606539 |
gatgatactgaaatcaagtaa |
2606519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 2620778 - 2620697
Alignment:
| Q |
320 |
acaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaagatccta |
401 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||| || ||| || ||| ||||||||||| | |||||||| |
|
|
| T |
2620778 |
acaggttttcgaccatagcgatcggctatcattccccataatatagatgtcgaagctctaccaagcatgtaggcagatccta |
2620697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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