View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_43 (Length: 319)
Name: NF5478_low_43
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 36198519 - 36198232
Alignment:
| Q |
14 |
gagatgaagatgcttaactttgcgttgaacaacaaggttaacccattttgcgagattgggaatgctaagagatgtgacgtgattacgaccagcagcatat |
113 |
Q |
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| T |
36198519 |
gagatgaagattcttaactttgcgttgaacaacaaggttaacccattttgcgagattgggaatgctaagagatgtgacgtgattacgactagcagcatat |
36198420 |
T |
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| Q |
114 |
tcaacgtccacgataaaactgtcgatggaatgattaccagtggcttctcgcgagagcataaaatagtcgacaaactgattgaataggagaatggattcac |
213 |
Q |
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| T |
36198419 |
tcaacgtccacgataaaactgtcgatggaatgattaccagtggcttctcgcgagagcataaaatagtcgacgaactgattgaataggagaatggattcac |
36198320 |
T |
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| Q |
214 |
agtctctcaatttgatatccgtgaaatcgaggataggaacacagcgccatagatgagtccacctcttggaaagaatggaagtggtaac |
301 |
Q |
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| T |
36198319 |
agtctctcaatttgatatccgtgaaatcgaggataggaacacagcgccatagatgagtccacctcttggaaagaatggaagtggtaac |
36198232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 694627 - 694704
Alignment:
| Q |
133 |
tgtcgatggaatgattaccagtggcttctcgcgagagcataaaatagtcgacaaactgattgaataggagaatggatt |
210 |
Q |
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| T |
694627 |
tgtcgatcaaattattaccagcggcttctcgcgagagcataacagagtagacaaactgattgaatcggagaatggatt |
694704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1012871 - 1012931
Alignment:
| Q |
15 |
agatgaagatgcttaactttgcgttgaacaacaaggttaacccattttgcgagattgggaa |
75 |
Q |
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| T |
1012871 |
agatgaagatggttgagtttgcgttgaacaacaaggttgatccatttagtgacattgggaa |
1012931 |
T |
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