View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_44 (Length: 318)
Name: NF5478_low_44
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 8410650 - 8410363
Alignment:
| Q |
18 |
aagaagttcctggtttgataaacaacttataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattagagatcaaatttaagtga |
117 |
Q |
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| T |
8410650 |
aagaagttcctggtttgataaacaacttataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattagagatcaaatttaagtga |
8410551 |
T |
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| Q |
118 |
gaattatatttattccattaattaataactaccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtctt |
217 |
Q |
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| T |
8410550 |
gaattatatttattccattaattaataactaccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtctt |
8410451 |
T |
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| Q |
218 |
ttggaaacacaatctcttctgagtctgtaaaacacacacgaaaacttccattccctaaatcttcgctaacacggccttcccaccacct |
305 |
Q |
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| T |
8410450 |
ttggaaacacaatctctcctgagtctgtaaaacacacacgaaaacttccattccctaaatcttcgctaacacggccttcccaccacct |
8410363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 9139733 - 9139890
Alignment:
| Q |
147 |
taccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagtctgta |
246 |
Q |
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| T |
9139733 |
taccttatggtttgtgattgggggaacccaattgtgattaatccactggcgatgaatcctaagaaggtcttttggaaacaccatctcttccgagtctgta |
9139832 |
T |
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| Q |
247 |
aaacacacacgaaaacttccattccctaaatcttcgctaacacggccttcccaccacc |
304 |
Q |
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| T |
9139833 |
aaacacacaagaaatcttccattccctaaatctgcgctaacgcggccttcccaccacc |
9139890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 159 - 304
Target Start/End: Original strand, 8042122 - 8042267
Alignment:
| Q |
159 |
tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagtctgtaaaacacacacga |
258 |
Q |
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| T |
8042122 |
tgtgattggcggaacccaattgtgatttatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttccgagtctgtaaaacacacacgg |
8042221 |
T |
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| Q |
259 |
aaacttccattccctaaatcttcgctaacacggccttcccaccacc |
304 |
Q |
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| T |
8042222 |
aaacttccattccctaaatcttcaataacgcggccttcccaccacc |
8042267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 8416158 - 8416064
Alignment:
| Q |
147 |
taccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagt |
241 |
Q |
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| T |
8416158 |
taccttatggtttgtgattgggggaacccaattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagt |
8416064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 8036693 - 8036770
Alignment:
| Q |
159 |
tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttc |
236 |
Q |
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| T |
8036693 |
tgtgactggcggaacccaattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacaccatctcttc |
8036770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 9139140 - 9139245
Alignment:
| Q |
20 |
gaagttcctggtttgataaacaactt--ataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattagagatcaaatttaagtga |
117 |
Q |
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| T |
9139140 |
gaagttcctggttggataaacaacttgtataaatatttaaagcattaacactgataatataagtatttatgtatgagacttagagactaaatttaagtga |
9139239 |
T |
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| Q |
118 |
gaatta |
123 |
Q |
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|||||| |
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| T |
9139240 |
gaatta |
9139245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 8416311 - 8416228
Alignment:
| Q |
22 |
agttcctggtttgataaacaactt--ataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattagaga |
103 |
Q |
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| T |
8416311 |
agttcctggttggataaacaacttgtataaatatttatagcattaacactgataatataagtatttatgtatgagagttagaga |
8416228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 8359981 - 8360036
Alignment:
| Q |
154 |
tggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaag |
209 |
Q |
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| T |
8359981 |
tggtttgtgattcggggaacccaattgtgattaatccatttacgatgaaccctaag |
8360036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 8041944 - 8041983
Alignment:
| Q |
20 |
gaagttcctggtttgataaacaact--tataaatatttat |
57 |
Q |
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| T |
8041944 |
gaagttcctggtttgataaacaacttgtataaatatttat |
8041983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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