View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_47 (Length: 308)
Name: NF5478_low_47
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 26840631 - 26840458
Alignment:
| Q |
1 |
gagaataaattgagaatagggatatgcatcggtaatcacatgtttcatttacaatacaactcttgaacaactttgggaacatggaattgaattacaaagt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
26840631 |
gagaatgaattgagaatagggatatgcatcggtaatcacatgtttcatatacaatacaactcttgaacaactttgggaatagggaattgaattagaaagt |
26840532 |
T |
|
| Q |
101 |
ggaatgctgattaggaattacacttagaaggagttaatgttaagatttgagagggaaaaagtaggttaagatta |
174 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26840531 |
ggaatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaaagtaggttaagatta |
26840458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 26840198 - 26840032
Alignment:
| Q |
1 |
gagaataaattgagaatagggatatgcatcggtaatcacatgtttcatttacaatacaactcttgaacaactttgggaacatggaattgaattacaaagt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||| ||||| |
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| T |
26840198 |
gagaatgaattgagaatagggatatgcatcggtaatcacatgtttcat-------acaacttttgaacaactttgggaatagggaattgaattagaaagt |
26840106 |
T |
|
| Q |
101 |
ggaatgctgattaggaattacacttagaaggagttaatgttaagatttgagagggaaaaagtaggttaagatta |
174 |
Q |
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| T |
26840105 |
ggaatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaaagtaggttaagatta |
26840032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 26840313 - 26840199
Alignment:
| Q |
174 |
acagaggagagaggagatgtaggtgttgtcgccggcgagtcatgtt-ggtcgatgagaggagggaggaaatgaaaaggaaaccgatgatgaagtggcaac |
272 |
Q |
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| T |
26840313 |
acagaggaaagaggagatgtaggtgttgtcgccggcgagtcatgttcggtcgatgagaggagggaggaaatgaaaaggaaactgatgatgaagtgg---- |
26840218 |
T |
|
| Q |
273 |
tatcagtatgttcgaattg |
291 |
Q |
| |
|
||||||| ||||||||||| |
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| T |
26840217 |
tatcagtgtgttcgaattg |
26840199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 26840746 - 26840632
Alignment:
| Q |
174 |
acagaggagagaggagatgtaggtgttgtcgccggcgagtcatgtt-ggtcgatgagaggagggaggaaatgaaaaggaaaccgatgatgaagtggcaac |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
26840746 |
acagaggagagaggagatgtaggtgttgtcgccggcgagtcatgttcggtcgatgagaggagggaggaaatgaaaaggaaactgatgataaagtgg---- |
26840651 |
T |
|
| Q |
273 |
tatcagtatgttcgaattg |
291 |
Q |
| |
|
||||||| ||||||||||| |
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| T |
26840650 |
tatcagtgtgttcgaattg |
26840632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 21922528 - 21922377
Alignment:
| Q |
21 |
gatatgcatcggtaatcacatgtttcatttacaatacaactcttgaacaactttgggaacatggaattgaattacaaagtggaatgctgattaggaatta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |
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| T |
21922528 |
gatatgcatcggtaatcacatgtttcatttacaatacaactcttgaacaactttgggaacaaggatttgaattccaaagtggaatgctgattaggaattg |
21922429 |
T |
|
| Q |
121 |
cacttagaaggagttaatgttaagatttgagagggaaaa-agtaggttaagatta |
174 |
Q |
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|
|||||||| |||||||| ||||||| ||||||||| | ||||||||||||| |
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| T |
21922428 |
cacttaga---agttaatgctaagattaaggagggaaaatattaggttaagatta |
21922377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 28922356 - 28922398
Alignment:
| Q |
87 |
ttgaattacaaagtggaatgctgattaggaattacacttagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
28922356 |
ttgaattacaaagtggaatgctgattaggattaccacttagaa |
28922398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 14456256 - 14456300
Alignment:
| Q |
95 |
caaagtggaatgctgattaggaattacacttagaaggagttaatg |
139 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
14456256 |
caaagtggaatgttgattaggaataccacttagaaggatttaatg |
14456300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 48850855 - 48850769
Alignment:
| Q |
88 |
tgaattacaaagtggaatgctgattaggaattacacttagaaggagttaatgttaagatttgagagggaaaaagtaggttaagatta |
174 |
Q |
| |
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|||||| ||||||| |||||||||||||| | ||||||||||||||||||| ||| || |||||||||| ||||||||||||| |
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|
| T |
48850855 |
tgaatttcaaagtgaaatgctgattaggattagcacttagaaggagttaatgctaacataatggagggaaaaattaggttaagatta |
48850769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 22780000 - 22780086
Alignment:
| Q |
88 |
tgaattacaaagtggaatgctgattaggaattacacttagaaggagttaatgttaagatttgagagggaaaaagtaggttaagatta |
174 |
Q |
| |
|
|||||||||||||| ||||||||||| || | ||||||||||||||||||| ||| | |||||||||| ||||||||||||| |
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| T |
22780000 |
tgaattacaaagtgaaatgctgattatgattagcacttagaaggagttaatgctaacacaatggagggaaaaattaggttaagatta |
22780086 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 15291588 - 15291504
Alignment:
| Q |
90 |
aattacaaagtggaatgctgattaggaattacacttagaaggagttaatgttaagatttgagagggaaaaagtaggttaagatta |
174 |
Q |
| |
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|||| |||||||||||| ||||||||| | ||||||||||||||||||| ||| | |||||||||| ||||||||||||| |
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| T |
15291588 |
aatttcaaagtggaatgttgattaggattagcacttagaaggagttaatgctaatacaatggagggaaaaattaggttaagatta |
15291504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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